CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006174
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cystathionine beta-synthase 
Protein Synonyms/Alias
 Beta-thionase; Serine sulfhydrase; Sulfur transfer protein 4 
Gene Name
 CYS4 
Gene Synonyms/Alias
 STR4; YGR155W; G6667 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
27NTPLIALKKLPKALGacetylation[1]
53YNPGGSIKDRIAKSMubiquitination[2]
58SIKDRIAKSMVEEAEubiquitination[2, 3]
96LALIGAIKGYRTIITubiquitination[2]
112PEKMSNEKVSVLKALubiquitination[2]
117NEKVSVLKALGAEIIubiquitination[2]
206GTISGISKYLKEQNDacetylation[1]
235AQPENLNKTDITDYKubiquitination[4]
258VPQVLDRKLIDVWYKacetylation[1]
273TDDKPSFKYARQLISacetylation[1]
327SIRSYLTKFVDDEWLubiquitination[2]
335FVDDEWLKKNNLWDDacetylation[1]
352LARFDSSKLEASTTKacetylation[1]
359KLEASTTKYADVFGNubiquitination[2]
370VFGNATVKDLHLKPVacetylation[1]
375TVKDLHLKPVVSVKEacetylation[1]
391AKVTDVIKILKDNGFacetylation[1]
394TDVIKILKDNGFDQLacetylation[1]
422TLSELLRKLSINNSNubiquitination[2]
443GKYLDFKKLNNFNDVubiquitination[2]
465SGKKKFIKFDENSKLacetylation[1]
471IKFDENSKLSDLNRFacetylation[1]
481DLNRFFEKNSSAVITacetylation[1]
492AVITDGLKPIHIVTKacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [3] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269]
 [4] Systematic approach for validating the ubiquitinated proteome.
 Seyfried NT, Xu P, Duong DM, Cheng D, Hanfelt J, Peng J.
 Anal Chem. 2008 Jun 1;80(11):4161-9. [PMID: 18433149
Functional Description
  
Sequence Annotation
 DOMAIN 373 432 CBS.
 REGION 196 200 Pyridoxal phosphate binding (By
 BINDING 84 84 Pyridoxal phosphate (By similarity).
 BINDING 289 289 Pyridoxal phosphate (By similarity).
 MOD_RES 53 53 N6-(pyridoxal phosphate)lysine (By
 MOD_RES 134 134 Phosphoserine.
 MOD_RES 350 350 Phosphoserine.
 MOD_RES 424 424 Phosphoserine.  
Keyword
 Amino-acid biosynthesis; CBS domain; Complete proteome; Cysteine biosynthesis; Lyase; Phosphoprotein; Pyridoxal phosphate; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 507 AA 
Protein Sequence
MTKSEQQADS RHNVIDLVGN TPLIALKKLP KALGIKPQIY AKLELYNPGG SIKDRIAKSM 60
VEEAEASGRI HPSRSTLIEP TSGNTGIGLA LIGAIKGYRT IITLPEKMSN EKVSVLKALG 120
AEIIRTPTAA AWDSPESHIG VAKKLEKEIP GAVILDQYNN MMNPEAHYFG TGREIQRQLE 180
DLNLFDNLRA VVAGAGTGGT ISGISKYLKE QNDKIQIVGA DPFGSILAQP ENLNKTDITD 240
YKVEGIGYDF VPQVLDRKLI DVWYKTDDKP SFKYARQLIS NEGVLVGGSS GSAFTAVVKY 300
CEDHPELTED DVIVAIFPDS IRSYLTKFVD DEWLKKNNLW DDDVLARFDS SKLEASTTKY 360
ADVFGNATVK DLHLKPVVSV KETAKVTDVI KILKDNGFDQ LPVLTEDGKL SGLVTLSELL 420
RKLSINNSNN DNTIKGKYLD FKKLNNFNDV SSYNENKSGK KKFIKFDENS KLSDLNRFFE 480
KNSSAVITDG LKPIHIVTKM DLLSYLA 507 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:SGD.
 GO:0004122; F:cystathionine beta-synthase activity; IDA:SGD.
 GO:0006535; P:cysteine biosynthetic process from serine; IDA:SGD.
 GO:0019343; P:cysteine biosynthetic process via cystathionine; IMP:SGD.
 GO:0070814; P:hydrogen sulfide biosynthetic process; IDA:SGD.
 GO:0019346; P:transsulfuration; IMP:SGD.
 GO:0007089; P:traversing start control point of mitotic cell cycle; IMP:SGD. 
Interpro
 IPR001216; Cys_synth_BS.
 IPR005857; Cysta_beta_synth.
 IPR000644; Cysta_beta_synth_core.
 IPR001926; Trp_syn_b_sub_like_PLP_eny_SF. 
Pfam
 PF00571; CBS
 PF00291; PALP 
SMART
 SM00116; CBS 
PROSITE
 PS51371; CBS
 PS00901; CYS_SYNTHASE 
PRINTS