CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-014616
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Regucalcin 
Protein Synonyms/Alias
 RC; Gluconolactonase; GNL; Senescence marker protein 30; SMP-30 
Gene Name
 Rgn 
Gene Synonyms/Alias
 Smp30 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
5***MSSIKVECVLREacetylation[1]
106NNRFNDGKVDPAGRYubiquitination[2]
144LFPDHSVKKYFDQVDacetylation[3]
144LFPDHSVKKYFDQVDsuccinylation[3]
144LFPDHSVKKYFDQVDubiquitination[2]
195SNRRIVYKMEKDEQIacetylation[1, 4]
195SNRRIVYKMEKDEQIubiquitination[2]
198RIVYKMEKDEQIPDGacetylation[4]
198RIVYKMEKDEQIPDGubiquitination[2]
213MCIDAEGKLWVACYNubiquitination[2]
233RLDPETGKRLQTVKLacetylation[1]
233RLDPETGKRLQTVKLubiquitination[2]
239GKRLQTVKLPVDKTTacetylation[1]
239GKRLQTVKLPVDKTTubiquitination[2]
244TVKLPVDKTTSCCFGacetylation[3]
244TVKLPVDKTTSCCFGsuccinylation[3]
244TVKLPVDKTTSCCFGubiquitination[2]
253TSCCFGGKDYSEMYVacetylation[1, 3]
253TSCCFGGKDYSEMYVsuccinylation[3]
253TSCCFGGKDYSEMYVubiquitination[2]
283PDAGNIFKITGLGVKubiquitination[2]
Reference
 [1] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [3] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654
Functional Description
 Gluconolactonase with low activity towards other sugar lactones, including gulonolactone and galactonolactone. Catalyzes a key step in ascorbic acid (vitamin C) biosynthesis. Can also hydrolyze diisopropyl phosphorofluoridate and phenylacetate (in vitro). Calcium-binding protein. Modulates Ca(2+) signaling, and Ca(2+)-dependent cellular processes and enzyme activities (By similarity). 
Sequence Annotation
 ACT_SITE 204 204 Proton donor/acceptor (Probable).
 METAL 18 18 Divalent metal cation.
 METAL 154 154 Divalent metal cation.
 METAL 204 204 Divalent metal cation.
 BINDING 101 101 Substrate.
 BINDING 103 103 Substrate.
 BINDING 121 121 Substrate.
 MOD_RES 3 3 Phosphoserine.  
Keyword
 3D-structure; Ascorbate biosynthesis; Calcium; Complete proteome; Cytoplasm; Hydrolase; Metal-binding; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 299 AA 
Protein Sequence
MSSIKVECVL RENYRCGESP VWEEASQSLL FVDIPSKIIC RWDTVSNQVQ RVAVDAPVSS 60
VALRQLGGYV ATIGTKFCAL NWENQSVFVL AMVDEDKKNN RFNDGKVDPA GRYFAGTMAE 120
ETAPAVLERH QGSLYSLFPD HSVKKYFDQV DISNGLDWSL DHKIFYYIDS LSYTVDAFDY 180
DLQTGQISNR RIVYKMEKDE QIPDGMCIDA EGKLWVACYN GGRVIRLDPE TGKRLQTVKL 240
PVDKTTSCCF GGKDYSEMYV TCARDGLNAE GLLRQPDAGN IFKITGLGVK GIAPYSYAG 299 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:MGI.
 GO:0005634; C:nucleus; IDA:MGI.
 GO:0005509; F:calcium ion binding; ISS:UniProtKB.
 GO:0030234; F:enzyme regulator activity; IEA:InterPro.
 GO:0004341; F:gluconolactonase activity; IDA:UniProtKB.
 GO:0008270; F:zinc ion binding; ISS:UniProtKB.
 GO:0006874; P:cellular calcium ion homeostasis; ISS:UniProtKB.
 GO:0019853; P:L-ascorbic acid biosynthetic process; IDA:UniProtKB.
 GO:0032781; P:positive regulation of ATPase activity; ISS:UniProtKB.
 GO:0050848; P:regulation of calcium-mediated signaling; ISS:UniProtKB. 
Interpro
 IPR011042; 6-blade_b-propeller_TolB-like.
 IPR008367; Regucalcin.
 IPR013658; SGL.
 IPR005511; SMP-30. 
Pfam
 PF08450; SGL 
SMART
  
PROSITE
  
PRINTS
 PR01791; REGUCALCIN.
 PR01790; SMP30FAMILY.