CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-006644
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 54S ribosomal protein L3, mitochondrial 
Protein Synonyms/Alias
 YmL3 
Gene Name
 MRPL3 
Gene Synonyms/Alias
 YMR024W; YM9711.14 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
148VNTVPTNKYLDNHGLacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
  
Sequence Annotation
 DOMAIN 139 205 RNase III.
 DOMAIN 302 372 DRBM.  
Keyword
 Complete proteome; Direct protein sequencing; Mitochondrion; Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 390 AA 
Protein Sequence
MGIVLKRAIA AGMKPFPNST WHWSRTIRPF SQHLSSTCFL QQSSRFTSKR YLHLSTLTQQ 60
EKRFLPESEL AKYKEYYQGL KSTVNEIPES VASKSPSLRT LHKRLQLPNE LTYSTLSRCL 120
TCPSAKLPDK INNPTKGAAF VNTVPTNKYL DNHGLNIMGK NLLSYHVTKS IIQKYPRLPT 180
VVLNAAVNAY ISEAVLAHIA KYWGIEVETT SVLSRYLKME PFEFTLGRLK FFNNSLNSKD 240
GIELITGKNF SETSALAMSV RSIIAAIWAV TEQKDSQAVY RFIDDHIMSR KLDITKMFQF 300
EQPTRELAML CRREGLEKPV SKLVAESGRL SKSPVFIVHV FSGEETLGEG YGSSLKEAKA 360
RAATDALMKW YCYEPLAQQE PVIDPGTVVV 390 
Gene Ontology
 GO:0005762; C:mitochondrial large ribosomal subunit; IPI:SGD.
 GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
 GO:0004525; F:ribonuclease III activity; IEA:InterPro.
 GO:0003735; F:structural constituent of ribosome; IPI:SGD.
 GO:0032543; P:mitochondrial translation; IC:SGD.
 GO:0006396; P:RNA processing; IEA:InterPro.
 GO:0016075; P:rRNA catabolic process; IEA:InterPro. 
Interpro
 IPR001159; Ds-RNA-bd.
 IPR014720; dsRNA-bd-like_dom.
 IPR011907; RNase_III.
 IPR000999; RNase_III_dom. 
Pfam
 PF00035; dsrm
 PF00636; Ribonuclease_3 
SMART
 SM00358; DSRM
 SM00535; RIBOc 
PROSITE
 PS50137; DS_RBD
 PS00517; RNASE_3_1
 PS50142; RNASE_3_2 
PRINTS