CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008246
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Inosine-5'-monophosphate dehydrogenase 3 
Protein Synonyms/Alias
 IMP dehydrogenase 3; IMPD 3; IMPDH 3 
Gene Name
 IMD3 
Gene Synonyms/Alias
 YLR432W; L9753.4 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
15KTALEFAKSLPRLDGacetylation[1]
32VQELMDSKTRGGLTYacetylation[1]
32VQELMDSKTRGGLTYubiquitination[2]
156FPVTEDGKRNGKLMGubiquitination[2]
463VDKGSIKKFIPYLYNubiquitination[2]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919]
 [2] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301
Functional Description
 Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate- limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth (By similarity). 
Sequence Annotation
 DOMAIN 121 183 CBS 1.
 DOMAIN 184 240 CBS 2.
 NP_BIND 278 280 NAD (By similarity).
 NP_BIND 328 330 NAD (By similarity).
 REGION 368 370 IMP binding (By similarity).
 REGION 391 392 IMP binding (By similarity).
 REGION 415 419 IMP binding (By similarity).
 ACT_SITE 335 335 Thioimidate intermediate (By similarity).
 METAL 330 330 Potassium; via carbonyl oxygen (By
 METAL 332 332 Potassium; via carbonyl oxygen (By
 METAL 335 335 Potassium; via carbonyl oxygen (By
 METAL 508 508 Potassium; via carbonyl oxygen; shared
 METAL 509 509 Potassium; via carbonyl oxygen; shared
 METAL 510 510 Potassium; via carbonyl oxygen; shared
 BINDING 333 333 IMP (By similarity).
 BINDING 449 449 IMP (By similarity).  
Keyword
 CBS domain; Complete proteome; Cytoplasm; GMP biosynthesis; Metal-binding; NAD; Oxidoreductase; Potassium; Purine biosynthesis; Reference proteome; Repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 523 AA 
Protein Sequence
MAAVRDYKTA LEFAKSLPRL DGLSVQELMD SKTRGGLTYN DFLVLPGLVD FPSSEVSLQT 60
KLTRNITLNT PFVSSPMDTV TESEMAIFMA LLGGIGFIHH NCTPEDQADM VRRVKNYENG 120
FINNPIVISP TTTVGEAKSM KERFGFSGFP VTEDGKRNGK LMGIVTSRDI QFVEDNSLLV 180
QDVMTKNPVT GAQGITLSEG NEILKKIKKG KLLIVDDNGN LVSMLSRTDL MKNQNYPLAS 240
KSATTKQLLC GAAIGTIDAD KERLRLLVEA GLDVVILDSS QGNSIFQLNM IKWIKETFPD 300
LEIIAGNVAT REQAANLIAA GADGLRIGMG SGSICITQEV MACGRPQGTA VYNVCEFANQ 360
FGIPCMADGG VQNIGHITKA LALGSSTVMM GGMLAGTTES PGEYFYQDGK RLKAYRGMGS 420
IDAMQKTGTK GNASTSRYFS ESDSVLVAQG VSGAVVDKGS IKKFIPYLYN GLQHSCQDIG 480
YKSLTLLKEN VQSGKVRFEF RTASAQLEGG VHNLHSYEKR LHN 523 
Gene Ontology
 GO:0005737; C:cytoplasm; IDA:SGD.
 GO:0005886; C:plasma membrane; IDA:SGD.
 GO:0003938; F:IMP dehydrogenase activity; TAS:SGD.
 GO:0046872; F:metal ion binding; IEA:HAMAP.
 GO:0000166; F:nucleotide binding; IEA:HAMAP.
 GO:0006177; P:GMP biosynthetic process; IEA:HAMAP.
 GO:0006183; P:GTP biosynthetic process; TAS:SGD. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR000644; Cysta_beta_synth_core.
 IPR005990; IMP_DH.
 IPR015875; IMP_DH/GMP_Rdtase_CS.
 IPR001093; IMP_DH_GMPRt. 
Pfam
 PF00571; CBS
 PF00478; IMPDH 
SMART
 SM00116; CBS 
PROSITE
 PS51371; CBS
 PS00487; IMP_DH_GMP_RED 
PRINTS