CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-005084
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA gyrase subunit B 
Protein Synonyms/Alias
  
Gene Name
 gyrB 
Gene Synonyms/Alias
 MPN_003; MP151 
Created Date
 July 27, 2013 
Organism
 Mycoplasma pneumoniae (strain ATCC 29342 / M129) 
NCBI Taxa ID
 272634 
Lysine Modification
Position
Peptide
Type
References
308GFRNALVKIINRFAVacetylation[1]
579KQQHPNLKYNLQRYKacetylation[1]
Reference
 [1] Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.
 van Noort V, Seebacher J, Bader S, Mohammed S, Vonkova I, Betts MJ, Kühner S, Kumar R, Maier T, O'Flaherty M, Rybin V, Schmeisky A, Yus E, Stülke J, Serrano L, Russell RB, Heck AJ, Bork P, Gavin AC.
 Mol Syst Biol. 2012 Feb 28;8:571. [PMID: 22373819
Functional Description
 DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings (By similarity). 
Sequence Annotation
 DOMAIN 435 549 Toprim.
 METAL 441 441 Magnesium 1; catalytic (By similarity).
 METAL 514 514 Magnesium 1; catalytic (By similarity).
 METAL 514 514 Magnesium 2 (By similarity).
 METAL 516 516 Magnesium 2 (By similarity).  
Keyword
 ATP-binding; Complete proteome; Cytoplasm; DNA-binding; Isomerase; Magnesium; Metal-binding; Nucleotide-binding; Reference proteome; Topoisomerase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 650 AA 
Protein Sequence
MEDNNKTQAY DSSSIKILEG LEAVRKRPGM YIGSTGEEGL HHMIWEIIDN SIDEAMGGFA 60
STVKLTLKDN FVTIVEDDGR GIPVDIHPKT NRSTVETVFT VLHAGGKFDN DSYKVSGGLH 120
GVGASVVNAL SSSFKVWVAR EHQQYFLAFH NGGEVIGDLV NEGKCDKEHG TKVEFVPDFT 180
VMEKSDYKQT VIASRLQQLA FLNKGIQIDF VDERRQNPQS FSWKYDGGLV QYIHHLNNEK 240
EPLFEDIIFG EKTDTVKSVS RDESYTIKVE VAFQYNKTYN QSIFSFCNNI NTTEGGTHVE 300
GFRNALVKII NRFAVENKFL KETDEKITRD DICEGLTAII SIKHPNPQYE GQTKKKLGNT 360
EVRPLVNSIV SEIFERFMLE NPQEANAIIR KTLLAQEARR RSQEARELTR RKSPFDSGSL 420
PGKLADCTTR DPSISELYIV EGDSAGGTAK TGRDRYFQAI LPLRGKILNV EKSHFEQIFN 480
NVEISALVMA VGCGIKPDFE LEKLRYNKII IMTDADVDGA HIRTLLLTFF FRFMYPLVEQ 540
GNIYIAQPPL YKVSYSNKDL YMQTDVQLEE WKQQHPNLKY NLQRYKGLGE MDAIQLWETT 600
MDPKVRTLLK VTVEDASIAD KAFSLLMGDE VPPRREFIEQ NARNVKNIDI 650 
Gene Ontology
 GO:0005694; C:chromosome; IEA:InterPro.
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0005524; F:ATP binding; IEA:HAMAP.
 GO:0003918; F:DNA topoisomerase type II (ATP-hydrolyzing) activity; IEA:HAMAP.
 GO:0000287; F:magnesium ion binding; IEA:HAMAP.
 GO:0006265; P:DNA topological change; IEA:InterPro.
 GO:0006261; P:DNA-dependent DNA replication; IEA:HAMAP. 
Interpro
 IPR002288; DNA_gyrase_B_C.
 IPR011557; GyrB.
 IPR003594; HATPase_ATP-bd.
 IPR020568; Ribosomal_S5_D2-typ_fold.
 IPR014721; Ribosomal_S5_D2-typ_fold_subgr.
 IPR001241; Topo_IIA.
 IPR013506; Topo_IIA_bsu_dom2.
 IPR013759; Topo_IIA_cen_dom.
 IPR013760; Topo_IIA_like_dom.
 IPR018522; TopoIIA_CS.
 IPR006171; Toprim_domain. 
Pfam
 PF00204; DNA_gyraseB
 PF00986; DNA_gyraseB_C
 PF02518; HATPase_c
 PF01751; Toprim 
SMART
 SM00387; HATPase_c
 SM00433; TOP2c 
PROSITE
 PS00177; TOPOISOMERASE_II
 PS50880; TOPRIM 
PRINTS
 PR00418; TPI2FAMILY.