CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-038828
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Polyubiquitin-B 
Protein Synonyms/Alias
  
Gene Name
 Ubc 
Gene Synonyms/Alias
 Ubb 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
6**MQIFVKTLTGKTIubiquitination[1]
11FVKTLTGKTITLEVEacetylation[2]
11FVKTLTGKTITLEVEubiquitination[1]
27SDTIENVKAKIQDKEacetylation[2]
27SDTIENVKAKIQDKEubiquitination[1]
29TIENVKAKIQDKEGIubiquitination[1]
33VKAKIQDKEGIPPDQacetylation[2]
33VKAKIQDKEGIPPDQubiquitination[1]
48QRLIFAGKQLEDGRTacetylation[2]
48QRLIFAGKQLEDGRTubiquitination[1]
63LSDYNIQKESTLHLVacetylation[2]
63LSDYNIQKESTLHLVubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113]
 [2] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Isopeptide bond; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 810 AA 
Protein Sequence
MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVEPSDTIE NVKAKIQDKE GIPPDQQRLI 120
FAGKQLEDGR TLSDYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE PSDTIENVKA 180
KIQDKEGIPP DQQRLIFAGK QLEDGRTLSD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT 240
ITLEVEPSDT IENVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLSDYNIQ KESTLHLVLR 300
LRGGMQIFVK TLTGKTITLE VEPSDTIENV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL 360
SDYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ 420
QRLIFAGKQL EDGRTLSDYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVEPSDTIE 480
NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLSDYNIQKE STLHLVLRLR GGMQIFVKTL 540
TGKTITLEVE PSDTIENVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLSD YNIQKESTLH 600
LVLRLRGGMQ IFVKTLTGKT ITLEVEPSDT IENVKAKIQD KEGIPPDQQR LIFAGKQLED 660
GRTLSDYNIQ KESTLHLVLR LRGGMQIFVK TLTGKTITLE VEPSDTIENV KAKIQDKEGI 720
PPDQQRLIFA GKQLEDGRTL SDYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLDVEPS 780
VNTKKVKQED TRTFLTTVSR KSPSCACSWV 810 
Gene Ontology
 GO:0097009; P:energy homeostasis; IEA:Compara.
 GO:0060613; P:fat pad development; IEA:Compara.
 GO:0008585; P:female gonad development; IEA:Compara.
 GO:0007144; P:female meiosis I; IEA:Compara.
 GO:0021888; P:hypothalamus gonadotrophin-releasing hormone neuron development; IEA:Compara.
 GO:0007141; P:male meiosis I; IEA:Compara.
 GO:0072520; P:seminiferous tubule development; IEA:Compara.
 GO:0010992; P:ubiquitin homeostasis; IEA:Compara. 
Interpro
 IPR000626; Ubiquitin.
 IPR019954; Ubiquitin_CS.
 IPR019956; Ubiquitin_subgr.
 IPR019955; Ubiquitin_supergroup. 
Pfam
 PF00240; ubiquitin 
SMART
 SM00213; UBQ 
PROSITE
 PS00299; UBIQUITIN_1
 PS50053; UBIQUITIN_2 
PRINTS
 PR00348; UBIQUITIN.