CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002954
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Nickel-responsive regulator 
Protein Synonyms/Alias
  
Gene Name
 nikR 
Gene Synonyms/Alias
 yhhG; b3481; JW3446 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
64SYVYEHEKRDLASRIacetylation[1]
131GHLQCLPKED*****acetylation[1]
Reference
 [1] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618
Functional Description
 Transcriptional repressor of the nikABCDE operon. Is active in the presence of excessive concentrations of intracellular nickel. 
Sequence Annotation
 METAL 76 76 Nickel.
 METAL 87 87 Nickel.
 METAL 89 89 Nickel.
 METAL 95 95 Nickel.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; DNA-binding; Metal-binding; Nickel; Reference proteome; Repressor; Transcription; Transcription regulation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 133 AA 
Protein Sequence
MQRVTITLDD DLLETLDSLS QRRGYNNRSE AIRDILRSAL AQEATQQHGT QGFAVLSYVY 60
EHEKRDLASR IVSTQHHHHD LSVATLHVHI NHDDCLEIAV LKGDMGDVQH FADDVIAQRG 120
VRHGHLQCLP KED 133 
Gene Ontology
 GO:0032993; C:protein-DNA complex; IDA:EcoCyc.
 GO:0003677; F:DNA binding; IDA:EcoCyc.
 GO:0016151; F:nickel cation binding; TAS:EcoCyc.
 GO:0003700; F:sequence-specific DNA binding transcription factor activity; IEA:HAMAP.
 GO:0006355; P:regulation of transcription, DNA-dependent; IMP:EcoCyc.
 GO:0010045; P:response to nickel cation; IEA:InterPro.
 GO:0006351; P:transcription, DNA-dependent; IEA:UniProtKB-KW. 
Interpro
 IPR013321; Arc_rbn_hlx_hlx.
 IPR002145; CopG.
 IPR022988; Ni_resp_reg_NikR.
 IPR014160; Nickel_NikR_proteobac.
 IPR010985; Ribbon_hlx_hlx.
 IPR014864; TF_NikR_Ni-bd_C. 
Pfam
 PF08753; NikR_C
 PF01402; RHH_1 
SMART
  
PROSITE
  
PRINTS