CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007815
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA-directed RNA polymerase I subunit RPA43 
Protein Synonyms/Alias
 A43; DNA-directed DNA-dependent RNA polymerase 36 kDa polypeptide 
Gene Name
 RPA43 
Gene Synonyms/Alias
 RRN12; YOR340C; O6271 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
97LDADPLSKEDTSEKLacetylation[1]
206GGSNSLGKFSFGNRSacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I which synthesizes ribosomal RNA precursors. Through its association with RRN3 is involved in recruitment of Pol I to rDNA promoters. In vitro, the A13-A43 subcomplex binds single-stranded RNA. 
Sequence Annotation
 MOD_RES 244 244 Phosphoserine.
 MOD_RES 251 251 Phosphoserine.
 MOD_RES 265 265 Phosphoserine.
 MOD_RES 269 269 Phosphoserine.
 MOD_RES 285 285 Phosphoserine.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; DNA-directed RNA polymerase; Nucleus; Phosphoprotein; Reference proteome; Transcription. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 326 AA 
Protein Sequence
MSQVKRANEN RETARFIKKH KKQVTNPIDE KNGTSNCIVR VPIALYVSLA PMYLENPLQG 60
VMKQHLNPLV MKYNNKVGGV VLGYEGLKIL DADPLSKEDT SEKLIKITPD TPFGFTWCHV 120
NLYVWQPQVG DVLEGYIFIQ SASHIGLLIH DAFNASIKKN NIPVDWTFVH NDVEEDADVI 180
NTDENNGNNN NEDNKDSNGG SNSLGKFSFG NRSLGHWVDS NGEPIDGKLR FTVRNVHTTG 240
RVVSVDGTLI SDADEEGNGY NSSRSQAESL PIVSNKKIVF DDEVSIENKE SHKELDLPEV 300
KEDNGSEIVY EENTSESNDG ESSDSD 326 
Gene Ontology
 GO:0005736; C:DNA-directed RNA polymerase I complex; IDA:SGD.
 GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
 GO:0042790; P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter; IGI:SGD. 
Interpro
 IPR005576; RNA_pol_Rpb7_N. 
Pfam
 PF03876; SHS2_Rpb7-N 
SMART
  
PROSITE
  
PRINTS