CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-024235
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Proline--tRNA ligase 
Protein Synonyms/Alias
 Prolyl-tRNA synthetase; ProRS 
Gene Name
 proS 
Gene Synonyms/Alias
 MSMEG_2621; MSMEI_2559 
Created Date
 July 27, 2013 
Organism
 Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) 
NCBI Taxa ID
 246196 
Lysine Modification
Position
Peptide
Type
References
173DVDDDGLKNAYYQHRpupylation[1]
Reference
 [1] Expansion of the mycobacterial "PUPylome".
 Watrous J, Burns K, Liu WT, Patel A, Hook V, Bafna V, Barry CE 3rd, Bark S, Dorrestein PC.
 Mol Biosyst. 2010 Feb;6(2):376-85. [PMID: 20094657
Functional Description
 Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro- AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys- tRNA(Pro) is not edited by ProRS (By similarity). 
Sequence Annotation
 CROSSLNK 173 173 Isoglutamyl lysine isopeptide (Lys-Gln)  
Keyword
 Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; Isopeptide bond; Ligase; Nucleotide-binding; Protein biosynthesis; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 585 AA 
Protein Sequence
MITRMSELFL RTLRDDPADA EVPSHKLLIR AGYVRAVGPG IYSWLPLGLR VLRKIENVVR 60
SEMNAIGAQE ILLPALLPRG PYETTNRWTE YGDTLFRLQD RRNNDYLLGP THEELFTLTV 120
KGEYSSYKDF PVILYQIQTK YRDEARPRAG ILRGREFVMK DSYSFDVDDD GLKNAYYQHR 180
EAYQRIFARL GVRYVIVSAV SGAMGGSASE EFLAESEVGE DTFVRCVESG YAANVEAVIT 240
RAPEAQPTEG LPEAKVYDTP DTPTIATLVE WANSASLPQF EGRTVTAADT LKNVLLKTRE 300
PGGEWELLAV GVPGDREVDE KRLGAALEPA EFALLDDADF AANPFLVKGY VGPKALQDNG 360
VRYLVDPRVV HGSSWITGAD APNRHVVGLV AGRDFTPDGT IEAAEVRDGD PSPDGAGVLT 420
SARGIEIGHI FQLGRKYTDA FSADVLGEDG KPLRLTMGSY GIGVSRLVAV IAEQQHDQLG 480
LRWPSSVAPF DVHVVVANKD AGARAGAAEL VADLDRLGHE VLFDDRQASP GVKFKDAELL 540
GMPWIVVVGR GWADGVVELR NRFTGETREI AADGAAAEIS SVLAG 585 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0002161; F:aminoacyl-tRNA editing activity; IEA:InterPro.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004827; F:proline-tRNA ligase activity; IEA:EC.
 GO:0006433; P:prolyl-tRNA aminoacylation; IEA:InterPro.
 GO:0006450; P:regulation of translational fidelity; IEA:GOC. 
Interpro
 IPR002314; aa-tRNA-synt_IIb_cons-dom.
 IPR006195; aa-tRNA-synth_II.
 IPR004154; Anticodon-bd.
 IPR002316; Pro-tRNA-ligase_IIa.
 IPR004500; Pro-tRNA-synth_IIa_bac-type.
 IPR023717; Pro-tRNA-Synthase_IIa_type1.
 IPR007214; YbaK/aa-tRNA-synth-assoc-dom. 
Pfam
 PF03129; HGTP_anticodon
 PF00587; tRNA-synt_2b
 PF04073; YbaK 
SMART
  
PROSITE
 PS50862; AA_TRNA_LIGASE_II 
PRINTS
 PR01046; TRNASYNTHPRO.