CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008238
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 U4/U6 snRNA-associated-splicing factor PRP24 
Protein Synonyms/Alias
 U4/U6 snRNP protein 
Gene Name
 PRP24 
Gene Synonyms/Alias
 YMR268C; YM8156.10C 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
403NQQNHSMKHVKPSCIacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Binds preferentially to the U4/U6 hybrid snRNAs. Can stimulate the annealing of U4 and U6. Could participate in both the formation and disassembly of the U4/U6 hybrid during splicing. 
Sequence Annotation
 DOMAIN 41 116 RRM 1.
 DOMAIN 117 195 RRM 2.
 DOMAIN 210 289 RRM 3.
 MOD_RES 19 19 Phosphoserine.  
Keyword
 3D-structure; Complete proteome; mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; Reference proteome; Repeat; RNA-binding. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 444 AA 
Protein Sequence
MEYGHHARPD SKRPLDEGSP AAAGLTSKKA NEALTRNREL TTVLVKNLPK SYNQNKVYKY 60
FKHCGPIIHV DVADSLKKNF RFARIEFARY DGALAAITKT HKVVGQNEII VSHLTECTLW 120
MTNFPPSYTQ RNIRDLLQDI NVVALSIRLP SLRFNTSRRF AYIDVTSKED ARYCVEKLNG 180
LKIEGYTLVT KVSNPLEKSK RTDSATLEGR EIMIRNLSTE LLDENLLRES FEGFGSIEKI 240
NIPAGQKEHS FNNCCAFMVF ENKDSAERAL QMNRSLLGNR EISVSLADKK PFLERNEVKR 300
LLASRNSKEL ETLICLFPLS DKVSPSLICQ FLQEEIHINE KDIRKILLVS DFNGAIIIFR 360
DSKFAAKMLM ILNGSQFQGK VIRSGTINDM KRYYNNQQNH SMKHVKPSCI NMMEKGPNLQ 420
VKKKIPDKQE QMSNDDFRKM FLGE 444 
Gene Ontology
 GO:0005688; C:U6 snRNP; IDA:SGD.
 GO:0000166; F:nucleotide binding; IEA:InterPro.
 GO:0017070; F:U6 snRNA binding; IDA:SGD.
 GO:0000244; P:assembly of spliceosomal tri-snRNP; IDA:SGD.
 GO:0000245; P:spliceosomal complex assembly; IMP:SGD. 
Interpro
 IPR008669; LSM_interact.
 IPR012677; Nucleotide-bd_a/b_plait.
 IPR000504; RRM_dom. 
Pfam
 PF05391; Lsm_interact
 PF00076; RRM_1 
SMART
 SM00360; RRM 
PROSITE
 PS50102; RRM 
PRINTS