CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-020680
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Cytochrome b-c1 complex subunit 1, mitochondrial 
Protein Synonyms/Alias
 Complex III subunit 1; Core protein I; Ubiquinol-cytochrome-c reductase complex core protein 1 
Gene Name
 Uqcrc1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
85GSRYETEKNNGAGYFacetylation[1, 2, 3, 4]
99FLEHLAFKGTKNRPGacetylation[2]
111RPGNALEKEVESIGAacetylation[2, 3, 4]
134EHTAYLIKALSKDLPacetylation[2]
138YLIKALSKDLPKVVEacetylation[2, 3, 4, 5, 6, 7]
138YLIKALSKDLPKVVEsuccinylation[7]
142ALSKDLPKVVELLADacetylation[6]
163LEDSQIEKERDVILRacetylation[1, 3, 6, 7]
163LEDSQIEKERDVILRsuccinylation[7]
248QLLDLAQKHLSSVSRacetylation[1, 3, 4, 5, 6, 8]
248QLLDLAQKHLSSVSRubiquitination[9]
447MLRDICSKYFYDQCPacetylation[4, 6]
Reference
 [1] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199]
 [2] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [3] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [5] Substrate and functional diversity of lysine acetylation revealed by a proteomics survey.
 Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, Cheng T, Kho Y, Xiao H, Xiao L, Grishin NV, White M, Yang XJ, Zhao Y.
 Mol Cell. 2006 Aug;23(4):607-18. [PMID: 16916647]
 [6] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [7] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [8] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599]
 [9] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This protein may mediate formation of the complex between cytochromes c and c1 (By similarity). 
Sequence Annotation
 MOD_RES 111 111 N6-acetyllysine (By similarity).
 MOD_RES 138 138 N6-acetyllysine.
 MOD_RES 248 248 N6-acetyllysine.  
Keyword
 Acetylation; Complete proteome; Direct protein sequencing; Electron transport; Membrane; Mitochondrion; Mitochondrion inner membrane; Reference proteome; Respiratory chain; Transit peptide; Transport. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 480 AA 
Protein Sequence
MAASAVCRAA CSGTQVLLRT RRSPALLRLP ALRGTATFAQ ALQSVPETQV SILDNGLRVA 60
SEQSSHATCT VGVWIDAGSR YETEKNNGAG YFLEHLAFKG TKNRPGNALE KEVESIGAHL 120
NAYSTREHTA YLIKALSKDL PKVVELLADI VQNSSLEDSQ IEKERDVILR EMQENDASMQ 180
NVVFDYLHAT AFQGTPLAQA VEGPSENVRR LSRTDLTDYL NRHYKAPRMV LAAAGGVEHQ 240
QLLDLAQKHL SSVSRVYEED AVPGLTPCRF TGSEIRHRDD ALPLAHVAIA VEGPGWANPD 300
NVTLQVANAI IGHYDCTYGG GVHLSSPLAS VAVANKLCQS FQTFNISYSD TGLLGAHFVC 360
DAMSIDDMVF FLQGQWMRLC TSATESEVTR GKNILRNALV SHLDGTTPVC EDIGRSLLTY 420
GRRIPLAEWE SRIQEVDAQM LRDICSKYFY DQCPAVAGYG PIEQLPDYNR IRSGMFWLRF 480 
Gene Ontology
 GO:0005743; C:mitochondrial inner membrane; IDA:MGI.
 GO:0005750; C:mitochondrial respiratory chain complex III; IEA:Compara.
 GO:0003824; F:catalytic activity; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:InterPro.
 GO:0006122; P:mitochondrial electron transport, ubiquinol to cytochrome c; IDA:MGI.
 GO:0014823; P:response to activity; IEA:Compara.
 GO:0043279; P:response to alkaloid; IEA:Compara. 
Interpro
 IPR011249; Metalloenz_LuxS/M16.
 IPR011237; Pept_M16_dom.
 IPR011765; Pept_M16_N.
 IPR007863; Peptidase_M16_C. 
Pfam
 PF00675; Peptidase_M16
 PF05193; Peptidase_M16_C 
SMART
  
PROSITE
 PS00143; INSULINASE 
PRINTS