CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-008273
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Tumor necrosis factor receptor superfamily member 3 
Protein Synonyms/Alias
 Lymphotoxin-beta receptor 
Gene Name
 Ltbr 
Gene Synonyms/Alias
 Tnfcr; Tnfrsf3 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
253RHPSLCRKLGTLLKRacetylation[1]
Reference
 [1] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753
Functional Description
 Receptor for the heterotrimeric lymphotoxin containing LTA and LTB, and for TNFS14/LIGHT. Promotes apoptosis via TRAF3 and TRAF5. May play a role in the development of lymphoid organs (By similarity). 
Sequence Annotation
 REPEAT 42 81 TNFR-Cys 1.
 REPEAT 82 124 TNFR-Cys 2.
 REPEAT 125 170 TNFR-Cys 3.
 REPEAT 171 213 TNFR-Cys 4.
 MOD_RES 315 315 Phosphoserine (By similarity).
 CARBOHYD 40 40 N-linked (GlcNAc...) (Potential).
 CARBOHYD 179 179 N-linked (GlcNAc...) (Potential).
 DISULFID 43 58 By similarity.
 DISULFID 59 72 By similarity.
 DISULFID 62 80 By similarity.
 DISULFID 83 98 By similarity.
 DISULFID 101 116 By similarity.
 DISULFID 104 124 By similarity.
 DISULFID 126 132 By similarity.
 DISULFID 139 150 By similarity.
 DISULFID 142 169 By similarity.
 DISULFID 172 187 By similarity.  
Keyword
 Apoptosis; Complete proteome; Disulfide bond; Glycoprotein; Membrane; Phosphoprotein; Receptor; Reference proteome; Repeat; Signal; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 415 AA 
Protein Sequence
MRLPRASSPC GLAWGPLLLG LSGLLVASQP QLVPPYRIEN QTCWDQDKEY YEPMHDVCCS 60
RCPPGEFVFA VCSRSQDTVC KTCPHNSYNE HWNHLSTCQL CRPCDIVLGF EEVAPCTSDR 120
KAECRCQPGM SCVYLDNECV HCEEERLVLC QPGTEAEVTD EIMDTDVNCV PCKPGHFQNT 180
SSPRARCQPH TRCEIQGLVE AAPGTSYSDT ICKNPPEPGA MLLLAILLSL VLFLLFTTVL 240
ACAWMRHPSL CRKLGTLLKR HPEGEESPPC PAPRADPHFP DLAEPLLPMS GDLSPSPAGP 300
PTAPSLEEVV LQQQSPLVQA RELEAEPGEH GQVAHGANGI HVTGGSVTVT GNIYIYNGPV 360
LGGTRGPGDP PAPPEPPYPT PEEGAPGPSE LSTPYQEDGK AWHLAETETL GCQDL 415 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0006915; P:apoptotic process; IEA:UniProtKB-KW.
 GO:0071260; P:cellular response to mechanical stimulus; IEA:Compara.
 GO:0048535; P:lymph node development; TAS:MGI.
 GO:2001238; P:positive regulation of extrinsic apoptotic signaling pathway; IEA:Compara.
 GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; IEA:Compara.
 GO:0046330; P:positive regulation of JNK cascade; IEA:Compara. 
Interpro
 IPR001368; TNFR/NGFR_Cys_rich_reg.
 IPR017349; TNFR_3_LTBR. 
Pfam
 PF00020; TNFR_c6 
SMART
 SM00208; TNFR 
PROSITE
 PS00652; TNFR_NGFR_1
 PS50050; TNFR_NGFR_2 
PRINTS
 PR01920; TNFACTORR3.