CPLM-036570

CPLM 1.0 - Compendium of Protein Lysine Modification

Tag

Content

CPLM ID

CPLM-036570

UniProt Accession

Genbank Protein ID

HQ206186; HQ206187; HQ206188; HQ206189; HQ206190; HQ206191; HQ206192; HQ206193; HQ206194; HQ206195; HQ206196; HQ206197; HQ206198; HQ206199; HQ206200; HQ206201; HQ206202; HQ206203; HQ206204; HQ206205; HQ206206; HQ206207; HQ206208; HQ206209; HQ206210; HQ206211; HQ206212; HQ206213; HQ206214; HQ206215; HQ206216; HQ206217; HQ206218; HQ206219; HQ206220; HQ206221; HQ206222; HQ206223; HQ206224; HQ206225

Genbank Nucleotide ID

ADP92094.1; ADP92095.1; ADP92096.1; ADP92097.1; ADP92098.1; ADP92099.1; ADP92100.1; ADP92101.1; ADP92102.1; ADP92103.1; ADP92104.1; ADP92105.1; ADP92106.1; ADP92107.1; ADP92108.1; ADP92109.1; ADP92110.1; ADP92111.1; ADP92112.1; ADP92113.1; ADP92114.1; ADP92115.1; ADP92116.1; ADP92117.1; ADP92118.1; ADP92119.1; ADP92120.1; ADP92121.1; ADP92122.1; ADP92123.1; ADP92124.1; ADP92125.1; ADP92126.1; ADP92127.1; ADP92128.1; ADP92129.1; ADP92130.1; ADP92131.1; ADP92132.1; ADP92133.1

Protein Name

DNA-directed RNA polymerase subunit RPABC1

Protein Synonyms/Alias

Gene Name

Gene Synonyms/Alias

Created Date

July 27, 2013

Organism

Homo sapiens (Human)

NCBI Taxa ID

9606

Lysine Modification

Position	Peptide	Type	References
88	KVGIKTIKVYCQRMQ	ubiquitination	[1]

Reference

[1] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
Chen Z, Zhou Y, Song J, Zhang Z.
Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789]

Functional Description

Sequence Annotation

Keyword

DNA-directed RNA polymerase; Transcription.

Sequence Source

UniProt (SWISSPROT/TrEMBL); GenBank; EMBL

Protein Length

210 AA

Protein Sequence

MDDEEETYRL WKIRKTIMQL CHDRGYLVTQ DELDQTLEEF KAQSGDKPSE GRPRRTDLTV 60
LVAHNDDPTD QMFVFFPEEP KVGIKTIKVY CQRMQEENIT RALIVVQQGM TPSAKQSLVD 120
MAPKYILEQF LQQELLINIT EHELVPEHVV MTKEEVTELL ARYKLRENQL PRIQAGDPVA 180
RYFGIKRGQV VKIIRPSETA GRYITYRLVQ 210

Gene Ontology

GO:0005634; C:nucleus; IEA:InterPro.
GO:0003677; F:DNA binding; IEA:InterPro.
GO:0003899; F:DNA-directed RNA polymerase activity; IEA:UniProtKB-KW.
GO:0006351; P:transcription, DNA-dependent; IEA:InterPro.

Interpro

IPR014381; DNA_RNA_pol_RPB5_euk/virus.
IPR005571; RNA_pol_Rpb5_N.
IPR000783; RNA_pol_subH/Rpb5_C.
IPR020608; RNA_pol_subH/Rpb5_CS.
IPR020609; RpoH/RPB5.

Pfam

PF01191; RNA_pol_Rpb5_C
PF03871; RNA_pol_Rpb5_N

SMART

PROSITE

PS01110; RNA_POL_H_23KD

PRINTS