CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004238
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyruvate kinase PKM 
Protein Synonyms/Alias
 Cytosolic thyroid hormone-binding protein; CTHBP; Opa-interacting protein 3; OIP-3; Pyruvate kinase 2/3; Pyruvate kinase muscle isozyme; Thyroid hormone-binding protein 1; THBP1; Tumor M2-PK; p58 
Gene Name
 PKM 
Gene Synonyms/Alias
 OIP3; PK2; PK3; PKM2 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
62SRSVETLKEMIKSGMubiquitination[1]
66ETLKEMIKSGMNVARubiquitination[1, 2, 3]
89EYHAETIKNVRTATEubiquitination[1, 2, 3]
115VAVALDTKGPEIRTGubiquitination[2, 3]
125EIRTGLIKGSGTAEVubiquitination[1]
135GTAEVELKKGATLKIubiquitination[2, 3]
136TAEVELKKGATLKITubiquitination[2]
162NILWLDYKNICKVVEubiquitination[2, 3]
166LDYKNICKVVEVGSKubiquitination[1, 2]
186GLISLQVKQKGADFLubiquitination[3]
188ISLQVKQKGADFLVTubiquitination[2, 3]
206NGGSLGSKKGVNLPGubiquitination[2, 3]
207GGSLGSKKGVNLPGAubiquitination[1, 2, 3]
224DLPAVSEKDIQDLKFubiquitination[2, 3]
266GEKGKNIKIISKIENubiquitination[2]
270KNIKIISKIENHEGVubiquitination[1, 2, 3]
305GIEIPAEKVFLAQKMubiquitination[1, 2, 3]
311EKVFLAQKMMIGRCNubiquitination[1, 2, 3]
322GRCNRAGKPVICATQubiquitination[1, 2, 3]
367MLSGETAKGDYPLEAubiquitination[3]
475GIFPVLCKDPVQEAWubiquitination[2]
498NFAMNVGKARGFFKKubiquitination[1, 3]
Reference
 [1] Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass.
 Povlsen LK, Beli P, Wagner SA, Poulsen SL, Sylvestersen KB, Poulsen JW, Nielsen ML, Bekker-Jensen S, Mailand N, Choudhary C.
 Nat Cell Biol. 2012 Oct;14(10):1089-98. [PMID: 23000965]
 [2] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [3] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Glycolytic enzyme that catalyzes the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) to ADP, generating ATP. Stimulates POU5F1-mediated transcriptional activation. Plays a general role in caspase independent cell death of tumor cells. The ratio betwween the highly active tetrameric form and nearly inactive dimeric form determines whether glucose carbons are channeled to biosynthetic processes or used for glycolytic ATP production. The transition between the 2 forms contributes to the control of glycolysis and is important for tumor cell proliferation and survival. 
Sequence Annotation
 REGION 307 531 Interaction with POU5F1.
 REGION 389 433 Intersubunit contact.
 REGION 432 437 D-fructose 1,6-bisphosphate binding; part
 REGION 514 521 D-fructose 1,6-bisphosphate binding; part
 METAL 75 75 Potassium (By similarity).
 METAL 77 77 Potassium (By similarity).
 METAL 113 113 Potassium.
 METAL 114 114 Potassium; via carbonyl oxygen (By
 METAL 272 272 Magnesium.
 METAL 296 296 Magnesium.
 BINDING 70 70 Serine.
 BINDING 73 73 Substrate (By similarity).
 BINDING 106 106 Serine.
 BINDING 295 295 Substrate; via amide nitrogen (By
 BINDING 296 296 Substrate; via amide nitrogen (By
 BINDING 328 328 Substrate (By similarity).
 BINDING 464 464 Serine.
 BINDING 482 482 D-fructose 1,6-bisphosphate; part of
 BINDING 489 489 D-fructose 1,6-bisphosphate; part of
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 37 37 Phosphoserine.
 MOD_RES 62 62 N6-acetyllysine.
 MOD_RES 89 89 N6-acetyllysine.
 MOD_RES 105 105 Phosphotyrosine.
 MOD_RES 148 148 Phosphotyrosine (By similarity).
 MOD_RES 166 166 N6-acetyllysine.
 MOD_RES 175 175 Phosphotyrosine.
 MOD_RES 195 195 Phosphothreonine.
 MOD_RES 266 266 N6-acetyllysine.
 MOD_RES 305 305 N6-acetyllysine.
 MOD_RES 403 403 4-hydroxyproline.
 MOD_RES 408 408 4-hydroxyproline.
 MOD_RES 433 433 N6-acetyllysine.  
Keyword
 3D-structure; Acetylation; Allosteric enzyme; Alternative splicing; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Glycolysis; Hydroxylation; Kinase; Magnesium; Metal-binding; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Potassium; Pyruvate; Reference proteome; Transferase; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 531 AA 
Protein Sequence
MSKPHSEAGT AFIQTQQLHA AMADTFLEHM CRLDIDSPPI TARNTGIICT IGPASRSVET 60
LKEMIKSGMN VARLNFSHGT HEYHAETIKN VRTATESFAS DPILYRPVAV ALDTKGPEIR 120
TGLIKGSGTA EVELKKGATL KITLDNAYME KCDENILWLD YKNICKVVEV GSKIYVDDGL 180
ISLQVKQKGA DFLVTEVENG GSLGSKKGVN LPGAAVDLPA VSEKDIQDLK FGVEQDVDMV 240
FASFIRKASD VHEVRKVLGE KGKNIKIISK IENHEGVRRF DEILEASDGI MVARGDLGIE 300
IPAEKVFLAQ KMMIGRCNRA GKPVICATQM LESMIKKPRP TRAEGSDVAN AVLDGADCIM 360
LSGETAKGDY PLEAVRMQHL IAREAEAAMF HRKLFEELVR ASSHSTDLME AMAMGSVEAS 420
YKCLAAALIV LTESGRSAHQ VARYRPRAPI IAVTRNPQTA RQAHLYRGIF PVLCKDPVQE 480
AWAEDVDLRV NFAMNVGKAR GFFKKGDVVI VLTGWRPGSG FTNTMRVVPV P 531 
Gene Ontology
 GO:0005829; C:cytosol; NAS:UniProtKB.
 GO:0070062; C:extracellular vesicular exosome; IDA:UniProtKB.
 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005634; C:nucleus; IDA:UniProtKB.
 GO:0005886; C:plasma membrane; IDA:HPA.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0000287; F:magnesium ion binding; IEA:InterPro.
 GO:0030955; F:potassium ion binding; IEA:InterPro.
 GO:0004743; F:pyruvate kinase activity; TAS:UniProtKB.
 GO:0006096; P:glycolysis; NAS:UniProtKB.
 GO:0012501; P:programmed cell death; IDA:UniProtKB.
 GO:0044281; P:small molecule metabolic process; TAS:Reactome. 
Interpro
 IPR001697; Pyr_Knase.
 IPR015813; Pyrv/PenolPyrv_Kinase-like_dom.
 IPR011037; Pyrv_Knase-like_insert_dom.
 IPR015794; Pyrv_Knase_a/b.
 IPR018209; Pyrv_Knase_AS.
 IPR015793; Pyrv_Knase_brl.
 IPR015795; Pyrv_Knase_C.
 IPR015806; Pyrv_Knase_insert_dom. 
Pfam
 PF00224; PK
 PF02887; PK_C 
SMART
  
PROSITE
 PS00110; PYRUVATE_KINASE 
PRINTS
 PR01050; PYRUVTKNASE.