CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-017875
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Citrate lyase subunit beta-like protein, mitochondrial 
Protein Synonyms/Alias
 Citrate lyase beta-like 
Gene Name
 Clybl 
Gene Synonyms/Alias
 Clb 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
39YSSLSNHKYVPRRAVacetylation[1]
55YVPGNDEKKIRKIPSacetylation[1, 2, 3, 4, 5]
55YVPGNDEKKIRKIPSsuccinylation[4]
59NDEKKIRKIPSLKVDacetylation[1, 3]
64IRKIPSLKVDCAVLDacetylation[1, 3, 5]
80EDGVAENKKNEARLRacetylation[1, 2, 3, 4, 5]
80EDGVAENKKNEARLRsuccinylation[4]
90EARLRIAKTLEDFDLacetylation[1, 3, 4, 5]
90EARLRIAKTLEDFDLsuccinylation[4]
102FDLGTTEKCVRINSVacetylation[5]
215SIGATSNKDTQDILYacetylation[3, 5]
300EELIAAFKEHQQLGKacetylation[1]
307KEHQQLGKGAFTFRGacetylation[1, 3, 4, 5]
307KEHQQLGKGAFTFRGsuccinylation[4]
Reference
 [1] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [2] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [3] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [4] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [5] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654
Functional Description
  
Sequence Annotation
 METAL 169 169 Magnesium (By similarity).
 METAL 204 204 Magnesium (By similarity).
 BINDING 105 105 Substrate (By similarity).
 BINDING 169 169 Substrate (By similarity).  
Keyword
 Complete proteome; Lyase; Magnesium; Metal-binding; Mitochondrion; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 338 AA 
Protein Sequence
MALCVLRNTV RGAAALPRLK ASHVVSVYKP RYSSLSNHKY VPRRAVLYVP GNDEKKIRKI 60
PSLKVDCAVL DCEDGVAENK KNEARLRIAK TLEDFDLGTT EKCVRINSVS SGLAEVDLET 120
FLQARVLPSS LMLPKVEGPE EIRWFSDKFS LHLKGRKLEQ PMNLIPFVET AMGLLNFKAV 180
CEETLKTGPQ VGLCLDAVVF GGEDFRASIG ATSNKDTQDI LYARQKVVVT AKAFGLQAID 240
LVYIDFRDED GLLRQSREAA AMGFTGKQVI HPNQIAVVQE QFTPTPEKIQ WAEELIAAFK 300
EHQQLGKGAF TFRGSMIDMP LLKQAQNIVT LATSIKEK 338 
Gene Ontology
 GO:0009346; C:citrate lyase complex; IEA:InterPro.
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0008815; F:citrate (pro-3S)-lyase activity; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro. 
Interpro
 IPR005000; Aldehyde-lyase_domain.
 IPR011206; Citrate_lyase_beta.
 IPR015813; Pyrv/PenolPyrv_Kinase-like_dom. 
Pfam
 PF03328; HpcH_HpaI 
SMART
  
PROSITE
  
PRINTS