CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010784
UniProt Accession
Genbank Protein ID
 X59961 
Genbank Nucleotide ID
Protein Name
 Histone H2B type 1 
Protein Synonyms/Alias
  
Gene Name
  
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
47VYVYKVLKQVHPDTGubiquitination[1]
108LLPGELAKHAVSEGTubiquitination[1]
116HAVSEGTKAVTKYTSubiquitination[1]
120EGTKAVTKYTSSK**ubiquitination[1]
Reference
 [1] Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis.
 Na CH, Jones DR, Yang Y, Wang X, Xu Y, Peng J.
 J Proteome Res. 2012 Sep 7;11(9):4722-32. [PMID: 22871113
Functional Description
 Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. 
Sequence Annotation
 MOD_RES 2 2 N-acetylproline (By similarity).
 MOD_RES 6 6 N6-acetyllysine; alternate.
 MOD_RES 6 6 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 12 12 N6-acetyllysine; alternate (By
 MOD_RES 12 12 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 13 13 N6-acetyllysine; alternate.
 MOD_RES 13 13 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 15 15 Phosphoserine; by STK4/MST1 (By
 MOD_RES 16 16 N6-acetyllysine; alternate.
 MOD_RES 16 16 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 17 17 N6-acetyllysine; alternate (By
 MOD_RES 17 17 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 21 21 N6-acetyllysine; alternate.
 MOD_RES 21 21 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 24 24 N6-acetyllysine; alternate (By
 MOD_RES 24 24 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 35 35 N6-crotonyl-L-lysine; alternate (By
 MOD_RES 37 37 Phosphoserine; by AMPK (By similarity).
 MOD_RES 43 43 Phosphotyrosine (By similarity).
 MOD_RES 47 47 N6-methyllysine (By similarity).
 MOD_RES 58 58 N6,N6-dimethyllysine (By similarity).
 MOD_RES 108 108 N6-methyllysine (By similarity).
 MOD_RES 112 112 Phosphoserine (By similarity).
 CROSSLNK 35 35 Glycyl lysine isopeptide (Lys-Gly)
 CROSSLNK 120 120 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Acetylation; Antibiotic; Antimicrobial; Chromosome; Complete proteome; Direct protein sequencing; DNA-binding; Isopeptide bond; Methylation; Nucleosome core; Nucleus; Phosphoprotein; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 125 AA 
Protein Sequence
MPEPAKSRPA PKKGSKKAVT KAQKKDGKER KRSRKESYSV YVYKVLKQVH PDTGISSKAM 60
GIMNSFVNDI FERIAGERRL AHYNKRSTIT SREIQTAVRL LLPGELAKHA VSEGTKAVTK 120
YTSSK 125 
Gene Ontology
 GO:0000786; C:nucleosome; IEA:UniProtKB-KW.
 GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
 GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
 GO:0042742; P:defense response to bacterium; IEA:UniProtKB-KW.
 GO:0006334; P:nucleosome assembly; IEA:InterPro. 
Interpro
 IPR009072; Histone-fold.
 IPR007125; Histone_core_D.
 IPR000558; Histone_H2B. 
Pfam
 PF00125; Histone 
SMART
 SM00427; H2B 
PROSITE
 PS00357; HISTONE_H2B 
PRINTS
 PR00621; HISTONEH2B.