CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-004386
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Transcription factor 4 
Protein Synonyms/Alias
 TCF-4; Class B basic helix-loop-helix protein 19; bHLHb19; Immunoglobulin transcription factor 2; ITF-2; SL3-3 enhancer factor 2; SEF-2 
Gene Name
 TCF4 
Gene Synonyms/Alias
 BHLHB19; ITF2; SEF2 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
542DDDKKDIKSITSNNDubiquitination[1]
558EDLTPEQKAEREKERubiquitination[1]
Reference
 [1] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661
Functional Description
 Transcription factor that binds to the immunoglobulin enchancer Mu-E5/KE5-motif. Involved in the initiation of neuronal differentiation. Activates transcription by binding to the E box (5'-CANNTG-3'). Binds to the E-box present in the somatostatin receptor 2 initiator element (SSTR2-INR) to activate transcription (By similarity). Preferentially binds to either 5'-ACANNTGT-3' or 5'-CCANNTGG-3'. 
Sequence Annotation
 DOMAIN 564 617 bHLH.
 REGION 1 83 Essential for MYOD1 inhibition (By
 REGION 379 400 Leucine-zipper.
 REGION 619 642 Class A specific domain.
 MOTIF 18 26 9aaTAD.
 MOD_RES 515 515 Phosphoserine.  
Keyword
 3D-structure; Activator; Alternative splicing; Complete proteome; Differentiation; Disease mutation; DNA-binding; Epilepsy; Mental retardation; Neurogenesis; Nucleus; Phosphoprotein; Polymorphism; Primary microcephaly; Reference proteome; Transcription; Transcription regulation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 667 AA 
Protein Sequence
MHHQQRMAAL GTDKELSDLL DFSAMFSPPV SSGKNGPTSL ASGHFTGSNV EDRSSSGSWG 60
NGGHPSPSRN YGDGTPYDHM TSRDLGSHDN LSPPFVNSRI QSKTERGSYS SYGRESNLQG 120
CHQQSLLGGD MDMGNPGTLS PTKPGSQYYQ YSSNNPRRRP LHSSAMEVQT KKVRKVPPGL 180
PSSVYAPSAS TADYNRDSPG YPSSKPATST FPSSFFMQDG HHSSDPWSSS SGMNQPGYAG 240
MLGNSSHIPQ SSSYCSLHPH ERLSYPSHSS ADINSSLPPM STFHRSGTNH YSTSSCTPPA 300
NGTDSIMANR GSGAAGSSQT GDALGKALAS IYSPDHTNNS FSSNPSTPVG SPPSLSAGTA 360
VWSRNGGQAS SSPNYEGPLH SLQSRIEDRL ERLDDAIHVL RNHAVGPSTA MPGGHGDMHG 420
IIGPSHNGAM GGLGSGYGTG LLSANRHSLM VGTHREDGVA LRGSHSLLPN QVPVPQLPVQ 480
SATSPDLNPP QDPYRGMPPG LQGQSVSSGS SEIKSDDEGD ENLQDTKSSE DKKLDDDKKD 540
IKSITSNNDD EDLTPEQKAE REKERRMANN ARERLRVRDI NEAFKELGRM VQLHLKSDKP 600
QTKLLILHQA VAVILSLEQQ VRERNLNPKA ACLKRREEEK VSSEPPPLSL AGPHPGMGDA 660
SNHMGQM 667 
Gene Ontology
 GO:0005667; C:transcription factor complex; ISS:BHF-UCL.
 GO:0070888; F:E-box binding; ISS:UniProtKB.
 GO:0046982; F:protein heterodimerization activity; ISS:UniProtKB.
 GO:0000978; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding; ISS:BHF-UCL.
 GO:0001077; F:RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription; ISS:BHF-UCL.
 GO:0001011; F:sequence-specific DNA binding RNA polymerase recruiting transcription factor activity; ISS:BHF-UCL.
 GO:0001087; F:TFIIB-class binding transcription factor activity; ISS:BHF-UCL.
 GO:0001093; F:TFIIB-class transcription factor binding; ISS:BHF-UCL.
 GO:0045666; P:positive regulation of neuron differentiation; ISS:UniProtKB.
 GO:0065004; P:protein-DNA complex assembly; ISS:BHF-UCL.
 GO:0006367; P:transcription initiation from RNA polymerase II promoter; ISS:BHF-UCL. 
Interpro
 IPR011598; bHLH_dom. 
Pfam
 PF00010; HLH 
SMART
 SM00353; HLH 
PROSITE
 PS50888; BHLH 
PRINTS