CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000932
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Putative nucleoside diphosphate kinase 
Protein Synonyms/Alias
 NDK; NDP kinase 
Gene Name
 NME2P1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
34PASEEHLKQHYIDLKacetylation[1]
41KQHYIDLKDRPFFPGacetylation[1]
70WEGLNVVKTGRVMLGacetylation[1]
70WEGLNVVKTGRVMLGubiquitination[2]
85ETNPADSKPGTIRGDacetylation[1]
109IHGSDSVKSAEKEISacetylation[1]
109IHGSDSVKSAEKEISubiquitination[3]
Reference
 [1] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572
Functional Description
 Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate (By similarity). 
Sequence Annotation
 ACT_SITE 103 103 Pros-phosphohistidine intermediate (By
 BINDING 45 45 ATP (By similarity).
 BINDING 73 73 ATP (By similarity).
 BINDING 79 79 ATP (By similarity).
 BINDING 90 90 ATP (By similarity).
 BINDING 100 100 ATP (By similarity).  
Keyword
 ATP-binding; Complete proteome; Kinase; Magnesium; Metal-binding; Nucleotide metabolism; Nucleotide-binding; Reference proteome; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 137 AA 
Protein Sequence
MQCGLVGKII KRFEQKGFRL VAMKFLPASE EHLKQHYIDL KDRPFFPGLV KYMNSGPVVA 60
MVWEGLNVVK TGRVMLGETN PADSKPGTIR GDFCIQVGRN IIHGSDSVKS AEKEISLRFK 120
PEELVDYKSC AHDWVYE 137 
Gene Ontology
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
 GO:0004550; F:nucleoside diphosphate kinase activity; IEA:EC.
 GO:0006241; P:CTP biosynthetic process; IEA:InterPro.
 GO:0006183; P:GTP biosynthetic process; IEA:InterPro.
 GO:0006228; P:UTP biosynthetic process; IEA:InterPro. 
Interpro
 IPR001564; Nucleoside_diP_kinase.
 IPR023005; Nucleoside_diP_kinase_AS. 
Pfam
 PF00334; NDK 
SMART
 SM00562; NDK 
PROSITE
 PS00469; NDP_KINASES 
PRINTS
 PR01243; NUCDPKINASE.