CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002670
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Neurofilament light polypeptide 
Protein Synonyms/Alias
 NF-L; 68 kDa neurofilament protein; Neurofilament triplet L protein 
Gene Name
 Nefl 
Gene Synonyms/Alias
 Nf68; Nfl 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
15PYFSTSYKRRYVETPubiquitination[1]
268DIRAQYEKLAAKNMQubiquitination[1]
272QYEKLAAKNMQNAEEubiquitination[1]
282QNAEEWFKSRFTVLTubiquitination[1]
294VLTESAAKNTDAVRAubiquitination[1]
316SRRLLKAKTLEIEACubiquitination[1]
332GMNEALEKQLQELEDubiquitination[1]
371SEMARYLKEYQDLLNubiquitination[1]
392IEIAAYRKLLEGEETubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Neurofilaments usually contain three intermediate filament proteins: L, M, and H which are involved in the maintenance of neuronal caliber. 
Sequence Annotation
 REGION 2 93 Head.
 REGION 94 397 Rod.
 REGION 94 125 Coil 1A.
 REGION 126 138 Linker 1.
 REGION 139 234 Coil 1B.
 REGION 235 253 Linker 12.
 REGION 254 272 Coil 2A.
 REGION 273 281 Linker 2.
 REGION 282 397 Coil 2B.
 REGION 382 392 Epitope; recognized by IF-specific
 REGION 398 543 Tail.
 REGION 398 444 Tail, subdomain A.
 REGION 445 543 Tail, subdomain B (acidic).
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 43 43 Phosphotyrosine.
 MOD_RES 56 56 Phosphoserine.
 MOD_RES 67 67 Phosphoserine (By similarity).
 MOD_RES 425 425 Phosphotyrosine.
 MOD_RES 433 433 Phosphotyrosine.
 MOD_RES 473 473 Phosphoserine.
 MOD_RES 532 532 Phosphoserine.
 CARBOHYD 21 21 O-linked (GlcNAc) (By similarity).
 CARBOHYD 27 27 O-linked (GlcNAc) (By similarity).  
Keyword
 Acetylation; Coiled coil; Complete proteome; Direct protein sequencing; Glycoprotein; Intermediate filament; Phosphoprotein; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 543 AA 
Protein Sequence
MSSFGYDPYF STSYKRRYVE TPRVHISSVR SGYSTARSAY SSYSAPVSSS LSVRRSYSSS 60
SGSLMPSLEN LDLSQVAAIS NDLKSIRTQE KAQLQDLNDR FASFIERVHE LEQQNKVLEA 120
ELLVLRQKHS EPSRFRALYE QEIRDLRLAA EDATNEKQAL QGEREGLEET LRNLQARYEE 180
EVLSREDAEG RLMEARKGAD EAALARAELE KRIDSLMDEI AFLKKVHEEE IAELQAQIQY 240
AQISVEMDVS SKPDLSAALK DIRAQYEKLA AKNMQNAEEW FKSRFTVLTE SAAKNTDAVR 300
AAKDEVSESR RLLKAKTLEI EACRGMNEAL EKQLQELEDK QNADISAMQD TINKLENELR 360
STKSEMARYL KEYQDLLNVK MALDIEIAAY RKLLEGEETR LSFTSVGSIT SGYSQSSQVF 420
GRSAYSGLQS SSYLMSARSF PAYYTSHVQE EQTEVEETIE ATKAEEAKDE PPSEGEAEEE 480
EKEKEEGEEE EGAEEEEAAK DESEDTKEEE EGGEGEEEDT KESEEEEKKE ESAGEEQVAK 540
KKD 543 
Gene Ontology
 GO:0030426; C:growth cone; IEA:Compara.
 GO:0005883; C:neurofilament; IDA:MGI.
 GO:0005198; F:structural molecule activity; IEA:InterPro.
 GO:0045110; P:intermediate filament bundle assembly; IGI:MGI.
 GO:0040011; P:locomotion; IMP:MGI.
 GO:0000226; P:microtubule cytoskeleton organization; IMP:MGI.
 GO:0043524; P:negative regulation of neuron apoptotic process; IMP:MGI.
 GO:0060052; P:neurofilament cytoskeleton organization; IMP:MGI.
 GO:0050885; P:neuromuscular process controlling balance; IMP:MGI.
 GO:0014012; P:peripheral nervous system axon regeneration; IMP:MGI.
 GO:0050772; P:positive regulation of axonogenesis; IMP:MGI.
 GO:0051258; P:protein polymerization; IEA:Compara.
 GO:0031133; P:regulation of axon diameter; IMP:MGI.
 GO:0051412; P:response to corticosterone stimulus; IEA:Compara.
 GO:0043434; P:response to peptide hormone stimulus; IEA:Compara.
 GO:0009636; P:response to toxic substance; IEA:Compara. 
Interpro
 IPR016044; F.
 IPR001664; IF.
 IPR006821; Intermed_filament_DNA-bd.
 IPR018039; Intermediate_filament_CS. 
Pfam
 PF00038; Filament
 PF04732; Filament_head 
SMART
  
PROSITE
 PS00226; IF 
PRINTS