CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-009690
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 14-3-3 protein zeta/delta 
Protein Synonyms/Alias
 Protein kinase C inhibitor protein 1; KCIP-1 
Gene Name
 YWHAZ 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
3*****MDKNELVQKAacetylation[1]
3*****MDKNELVQKAubiquitination[2, 3]
9DKNELVQKAKLAEQAubiquitination[2, 3, 4, 5, 6, 7]
11NELVQKAKLAEQAERubiquitination[2, 3, 4, 6, 7]
49NLLSVAYKNVVGARRubiquitination[2, 3, 4, 6, 7, 8]
68VVSSIEQKTEGAEKKacetylation[1]
68VVSSIEQKTEGAEKKubiquitination[3, 6, 7, 8]
74QKTEGAEKKQQMAREubiquitination[7]
85MAREYREKIETELRDubiquitination[3]
115NASQAESKVFYLKMKacetylation[1]
115NASQAESKVFYLKMKubiquitination[3, 5, 7]
120ESKVFYLKMKGDYYRubiquitination[3, 6, 7]
122KVFYLKMKGDYYRYLubiquitination[6, 7]
138EVAAGDDKKGIVDQSubiquitination[2, 3, 4, 6, 7, 8]
139VAAGDDKKGIVDQSQubiquitination[3, 4, 5, 6, 7, 8]
157QEAFEISKKEMQPTHubiquitination[3, 4, 6, 7]
158EAFEISKKEMQPTHPubiquitination[3, 4, 5, 6, 7]
193EKACSLAKTAFDEAIubiquitination[6, 8]
Reference
 [1] Lysine acetylation targets protein complexes and co-regulates major cellular functions.
 Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M, Walther TC, Olsen JV, Mann M.
 Science. 2009 Aug 14;325(5942):834-40. [PMID: 19608861]
 [2] Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition.
 Udeshi ND, Mani DR, Eisenhaure T, Mertins P, Jaffe JD, Clauser KR, Hacohen N, Carr SA.
 Mol Cell Proteomics. 2012 May;11(5):148-59. [PMID: 22505724]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level.
 Danielsen JM, Sylvestersen KB, Bekker-Jensen S, Szklarczyk D, Poulsen JW, Horn H, Jensen LJ, Mailand N, Nielsen ML.
 Mol Cell Proteomics. 2011 Mar;10(3):M110.003590. [PMID: 21139048]
 [5] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [6] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [7] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [8] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931
Functional Description
 Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. 
Sequence Annotation
 MOD_RES 1 1 N-acetylmethionine.
 MOD_RES 3 3 N6-acetyllysine.
 MOD_RES 58 58 Phosphoserine; by PKA and PKB/AKT1.
 MOD_RES 68 68 N6-acetyllysine.
 MOD_RES 184 184 Phosphoserine; by MAPK8.
 MOD_RES 207 207 Phosphoserine.
 MOD_RES 232 232 Phosphothreonine; by CK1.  
Keyword
 3D-structure; Acetylation; Alternative splicing; Complete proteome; Cytoplasm; Direct protein sequencing; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 245 AA 
Protein Sequence
MDKNELVQKA KLAEQAERYD DMAACMKSVT EQGAELSNEE RNLLSVAYKN VVGARRSSWR 60
VVSSIEQKTE GAEKKQQMAR EYREKIETEL RDICNDVLSL LEKFLIPNAS QAESKVFYLK 120
MKGDYYRYLA EVAAGDDKKG IVDQSQQAYQ EAFEISKKEM QPTHPIRLGL ALNFSVFYYE 180
ILNSPEKACS LAKTAFDEAI AELDTLSEES YKDSTLIMQL LRDNLTLWTS DTQGDEAEAG 240
EGGEN 245 
Gene Ontology
 GO:0031252; C:cell leading edge; IEA:Compara.
 GO:0030659; C:cytoplasmic vesicle membrane; TAS:Reactome.
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0042470; C:melanosome; IEA:UniProtKB-SubCell.
 GO:0005739; C:mitochondrion; IEA:Compara.
 GO:0005654; C:nucleoplasm; TAS:Reactome.
 GO:0048471; C:perinuclear region of cytoplasm; IEA:Compara.
 GO:0014069; C:postsynaptic density; IEA:Compara.
 GO:0043234; C:protein complex; IEA:Compara.
 GO:0016044; P:cellular membrane organization; TAS:Reactome.
 GO:0010467; P:gene expression; TAS:Reactome.
 GO:0002553; P:histamine secretion by mast cell; IEA:Compara.
 GO:0097193; P:intrinsic apoptotic signaling pathway; TAS:Reactome.
 GO:0016071; P:mRNA metabolic process; TAS:Reactome.
 GO:0043066; P:negative regulation of apoptotic process; TAS:ProtInc.
 GO:0030168; P:platelet activation; TAS:Reactome.
 GO:1900740; P:positive regulation of protein insertion into mitochondrial membrane involved in apoptotic signaling pathway; TAS:Reactome.
 GO:0006626; P:protein targeting to mitochondrion; IEA:Compara. 
Interpro
 IPR000308; 14-3-3.
 IPR023409; 14-3-3_CS.
 IPR023410; 14-3-3_domain. 
Pfam
 PF00244; 14-3-3 
SMART
 SM00101; 14_3_3 
PROSITE
 PS00796; 1433_1
 PS00797; 1433_2 
PRINTS
 PR00305; 1433ZETA.