CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-035628
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 PRP4 pre-mRNA processing factor 4 homolog (Yeast) 
Protein Synonyms/Alias
 Protein Prpf4 
Gene Name
 Prpf4 
Gene Synonyms/Alias
 rCG_55299 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
26LVAPVVKKPHIYYGSacetylation[1]
37YYGSLEEKERERLAKacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 521 AA 
Protein Sequence
MASSRASSTT TKTKAPDDLV APVVKKPHIY YGSLEEKERE RLAKGESGIL GKEGLKAGIE 60
AGNINITSGE VFEIEEHISE RQAEVLAEFE RRKRARQINV STDDSEVKAC LRALGEPITL 120
FGEGPAERRE RLRNILSVVG TDALKKTKKD DEKSKKSKEE YQQTWYHEGP NSLKVARLWI 180
ANYSLPRAMK RLEEARLHKE IPETTRTSQM QELHKSLRSL NNFCSQIGDD RPISYCHFSP 240
NSKMLATACW SGLCKLWSVP DCSLLHTLRG HNTNVGAIVF HPKSTVSLDQ KDVNLASCAA 300
DGSVKLWSLD SDEPVADIEG HTVRVARVMW HPSGRFLGTT CYDRSWRLWD LEAQEEILHQ 360
EGHSMGVYDI AFHQDGSLAG TGGLDAFGRV WDLRTGRCIM FLEGHLKEIY GISFSPNGYH 420
IATGSGDNTC KVWDLRQRRC VYTIPAHQNL VTGVKFEPIH GDFLLTGAYD NTAKIWTHPG 480
WSPLKTLAGH EGKVMGLDIS SDGQLIATCS YDRTFKLWMA E 521 
Gene Ontology
 GO:0015030; C:Cajal body; IEA:Compara.
 GO:0071001; C:U4/U6 snRNP; IEA:Compara.
 GO:0008380; P:RNA splicing; IEA:InterPro. 
Interpro
 IPR020472; G-protein_beta_WD-40_rep.
 IPR014906; PRP4.
 IPR027106; Prp4/Asa1.
 IPR003648; SFM.
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR019775; WD40_repeat_CS.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF08799; PRP4
 PF00400; WD40 
SMART
 SM00500; SFM
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS
 PR00320; GPROTEINBRPT.