CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001846
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Phosphoglycerate mutase 1 
Protein Synonyms/Alias
 PGAM 1; BPG-dependent PGAM 1; MPGM 1; Phosphoglyceromutase 1 
Gene Name
 GPM1 
Gene Synonyms/Alias
 GPM; YKL152C; YKL607 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
17GQSEWNEKNLFTGWVubiquitination[1]
27FTGWVDVKLSAKGQQubiquitination[1]
31VDVKLSAKGQQEAARubiquitination[1, 2]
44ARAGELLKEKKVYPDacetylation[3]
44ARAGELLKEKKVYPDubiquitination[1]
47GELLKEKKVYPDVLYubiquitination[1]
57PDVLYTSKLSRAIQTacetylation[3]
57PDVLYTSKLSRAIQTubiquitination[1, 2]
71TANIALEKADRLWIPacetylation[3]
71TANIALEKADRLWIPubiquitination[1, 2]
96HYGDLQGKDKAETLKacetylation[3]
98GDLQGKDKAETLKKFacetylation[3]
109LKKFGEEKFNTYRRSacetylation[3]
109LKKFGEEKFNTYRRSubiquitination[1, 2]
133ASSPFSQKGDERYKYacetylation[3]
133ASSPFSQKGDERYKYubiquitination[1]
139QKGDERYKYVDPNVLubiquitination[1, 2]
169YWQDVIAKDLLSGKTacetylation[3]
169YWQDVIAKDLLSGKTubiquitination[1]
175AKDLLSGKTVMIAAHacetylation[3]
175AKDLLSGKTVMIAAHubiquitination[1, 2]
191NSLRGLVKHLEGISDacetylation[3]
191NSLRGLVKHLEGISDubiquitination[1, 2]
221FELDENLKPSKPSYYacetylation[3]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [3] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Interconversion of 3- and 2-phosphoglycerate with 2,3- bisphosphoglycerate as the primer of the reaction. Can also Catalyze the reaction of EC 5.4.2.4 (synthase) and EC 3.1.3.13 (phosphatase), but with a reduced activity. 
Sequence Annotation
 REGION 21 22 2-phospho-D-glycerate binding.
 REGION 87 90 2-phospho-D-glycerate binding.
 REGION 114 115 2-phospho-D-glycerate bindingy (By
 ACT_SITE 9 9 Tele-phosphohistidine intermediate.
 ACT_SITE 182 182
 BINDING 15 15 2-phospho-D-glycerate.
 BINDING 60 60 2-phospho-D-glycerate.
 MOD_RES 12 12 Phosphoserine.
 MOD_RES 49 49 Phosphotyrosine.
 MOD_RES 116 116 Phosphoserine.
 MOD_RES 127 127 Phosphoserine.
 MOD_RES 128 128 Phosphoserine.
 MOD_RES 185 185 Phosphoserine.
 MOD_RES 197 197 Phosphoserine.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Glycolysis; Isomerase; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 247 AA 
Protein Sequence
MPKLVLVRHG QSEWNEKNLF TGWVDVKLSA KGQQEAARAG ELLKEKKVYP DVLYTSKLSR 60
AIQTANIALE KADRLWIPVN RSWRLNERHY GDLQGKDKAE TLKKFGEEKF NTYRRSFDVP 120
PPPIDASSPF SQKGDERYKY VDPNVLPETE SLALVIDRLL PYWQDVIAKD LLSGKTVMIA 180
AHGNSLRGLV KHLEGISDAD IAKLNIPTGI PLVFELDENL KPSKPSYYLD PEAAAAGAAA 240
VANQGKK 247 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0005758; C:mitochondrial intermembrane space; IDA:SGD.
 GO:0004619; F:phosphoglycerate mutase activity; IDA:SGD.
 GO:0006094; P:gluconeogenesis; IMP:SGD.
 GO:0006096; P:glycolysis; IMP:SGD. 
Interpro
 IPR013078; His_Pase_superF_clade-1.
 IPR001345; PG/BPGM_mutase_AS.
 IPR005952; Phosphogly_mut1. 
Pfam
 PF00300; His_Phos_1 
SMART
 SM00855; PGAM 
PROSITE
 PS00175; PG_MUTASE 
PRINTS