CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-018443
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 C-type lectin domain family 2 member D 
Protein Synonyms/Alias
 C-type lectin-related protein B; Clr-b; Lectin-like transmembrane protein; Osteoclast inhibitory lectin 
Gene Name
 Clec2d 
Gene Synonyms/Alias
 Clrb; Ocil 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
24PQEVEVGKILQGKRHubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Receptor for KLRB1B that protects target cells against natural killer cell-mediated lysis. Inhibits osteoclast formation. Binds high molecular weight sulfated glycosaminoglycans. 
Sequence Annotation
 DOMAIN 87 202 C-type lectin.
 CARBOHYD 100 100 N-linked (GlcNAc...) (Potential).
 DISULFID 80 91 By similarity.  
Keyword
 Cell membrane; Complete proteome; Disulfide bond; Glycoprotein; Lectin; Membrane; Receptor; Reference proteome; Signal-anchor; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 207 AA 
Protein Sequence
MCVTKASLPM LSPTGSPQEV EVGKILQGKR HGTISPESCA KLYCYYGVIM VLTVAVIALS 60
VALSATKTEQ IPVNKTYAAC PQNWIGVENK CFYFSEYPSN WTFAQAFCMA QEAQLARFDN 120
QDELNFLMRY KANFDSWIGL HRESSEHPWK WTDNTEYNNT IPIRGEERFA YLNNNGISST 180
RIYSLRMWIC SKLNSYSLHC QTPFFPS 207 
Gene Ontology
 GO:0009897; C:external side of plasma membrane; IDA:MGI.
 GO:0005887; C:integral to plasma membrane; TAS:MGI.
 GO:0030246; F:carbohydrate binding; ISS:MGI.
 GO:0046703; F:natural killer cell lectin-like receptor binding; IDA:MGI.
 GO:0004888; F:transmembrane signaling receptor activity; ISS:MGI.
 GO:0006968; P:cellular defense response; TAS:MGI.
 GO:0045671; P:negative regulation of osteoclast differentiation; IDA:MGI.
 GO:0042270; P:protection from natural killer cell mediated cytotoxicity; IDA:MGI. 
Interpro
 IPR001304; C-type_lectin.
 IPR016186; C-type_lectin-like.
 IPR016187; C-type_lectin_fold. 
Pfam
 PF00059; Lectin_C 
SMART
 SM00034; CLECT 
PROSITE
 PS00615; C_TYPE_LECTIN_1
 PS50041; C_TYPE_LECTIN_2 
PRINTS