CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-010745
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Glycerol-3-phosphate dehydrogenase [NAD(+)] 1 
Protein Synonyms/Alias
  
Gene Name
 GPD1 
Gene Synonyms/Alias
 DAR1; HOR1; OSG1; YDL022W; D2830 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
138PRICSQLKGHVDSHVacetylation[1]
152VRAISCLKGFEVGAKacetylation[1]
211KDFRGEGKDVDHKVLacetylation[1]
Reference
 [1] Proteome-wide analysis of lysine acetylation suggests its broad regulatory scope in Saccharomyces cerevisiae.
 Henriksen P, Wagner SA, Weinert BT, Sharma S, Bacinskaja G, Rehman M, Juffer AH, Walther TC, Lisby M, Choudhary C.
 Mol Cell Proteomics. 2012 Nov;11(11):1510-22. [PMID: 22865919
Functional Description
 Catalyzes the production and accumulation of glycerol during hyperosmotic stress conditions. Glycerol acts as a osmoregulator that prevents loss of water and turgor of the cells. 
Sequence Annotation
 NP_BIND 41 46 NAD (By similarity).
 REGION 310 311 Substrate binding (By similarity).
 ACT_SITE 245 245 Proton acceptor (By similarity).
 BINDING 129 129 NAD (By similarity).
 BINDING 152 152 NAD; via amide nitrogen (By similarity).
 BINDING 152 152 Substrate (By similarity).
 BINDING 185 185 NAD; via amide nitrogen (By similarity).
 BINDING 310 310 NAD (By similarity).
 BINDING 339 339 NAD (By similarity).
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 24 24 Phosphoserine.
 MOD_RES 27 27 Phosphoserine.  
Keyword
 3D-structure; Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing; NAD; Oxidoreductase; Peroxisome; Phosphoprotein; Reference proteome; Stress response. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 391 AA 
Protein Sequence
MSAAADRLNL TSGHLNAGRK RSSSSVSLKA AEKPFKVTVI GSGNWGTTIA KVVAENCKGY 60
PEVFAPIVQM WVFEEEINGE KLTEIINTRH QNVKYLPGIT LPDNLVANPD LIDSVKDVDI 120
IVFNIPHQFL PRICSQLKGH VDSHVRAISC LKGFEVGAKG VQLLSSYITE ELGIQCGALS 180
GANIATEVAQ EHWSETTVAY HIPKDFRGEG KDVDHKVLKA LFHRPYFHVS VIEDVAGISI 240
CGALKNVVAL GCGFVEGLGW GNNASAAIQR VGLGEIIRFG QMFFPESREE TYYQESAGVA 300
DLITTCAGGR NVKVARLMAT SGKDAWECEK ELLNGQSAQG LITCKEVHEW LETCGSVEDF 360
PLFEAVYQIV YNNYPMKNLP DMIEELDLHE D 391 
Gene Ontology
 GO:0005829; C:cytosol; IDA:SGD.
 GO:0009331; C:glycerol-3-phosphate dehydrogenase complex; IEA:InterPro.
 GO:0005634; C:nucleus; IDA:SGD.
 GO:0005777; C:peroxisome; IDA:SGD.
 GO:0004367; F:glycerol-3-phosphate dehydrogenase [NAD+] activity; IMP:SGD.
 GO:0051287; F:NAD binding; IEA:InterPro.
 GO:0005975; P:carbohydrate metabolic process; IEA:InterPro.
 GO:0046168; P:glycerol-3-phosphate catabolic process; IEA:InterPro.
 GO:0006973; P:intracellular accumulation of glycerol; IMP:SGD.
 GO:0006116; P:NADH oxidation; IMP:SGD. 
Interpro
 IPR008927; 6-PGluconate_DH_C-like.
 IPR013328; DH_multihelical.
 IPR006168; G3P_DH_NAD-dep.
 IPR006109; G3P_DH_NAD-dep_C.
 IPR017751; G3P_DH_NAD-dep_euk.
 IPR011128; G3P_DH_NAD-dep_N.
 IPR016040; NAD(P)-bd_dom. 
Pfam
 PF07479; NAD_Gly3P_dh_C
 PF01210; NAD_Gly3P_dh_N 
SMART
  
PROSITE
 PS00957; NAD_G3PDH 
PRINTS
 PR00077; GPDHDRGNASE.