CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002738
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein disulfide-isomerase 
Protein Synonyms/Alias
 PDI; Cellular thyroid hormone-binding protein; Endoplasmic reticulum resident protein 59; ER protein 59; ERp59; Prolyl 4-hydroxylase subunit beta; p55 
Gene Name
 P4hb 
Gene Synonyms/Alias
 Pdia1 
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
33DNVLVLKKSNFEEALubiquitination[1]
67ALAPEYAKAAAKLKAacetylation[2, 3, 4]
67ALAPEYAKAAAKLKAsuccinylation[3]
67ALAPEYAKAAAKLKAubiquitination[1]
83GSEIRLAKVDATEESacetylation[4]
83GSEIRLAKVDATEESubiquitination[1]
105VRGYPTIKFFKNGDTacetylation[2]
108YPTIKFFKNGDTASPacetylation[2]
108YPTIKFFKNGDTASPubiquitination[1]
132DDIVNWLKKRTGPAAacetylation[2, 3]
132DDIVNWLKKRTGPAAsuccinylation[3]
132DDIVNWLKKRTGPAAubiquitination[1]
202FSKYQLDKDGVVLFKacetylation[2, 3, 5]
202FSKYQLDKDGVVLFKsuccinylation[3]
202FSKYQLDKDGVVLFKubiquitination[1]
209KDGVVLFKKFDEGRNacetylation[2, 4]
224NFEGEITKEKLLDFIacetylation[2, 3, 4, 5, 6]
224NFEGEITKEKLLDFIsuccinylation[3]
226EGEITKEKLLDFIKHubiquitination[1]
232EKLLDFIKHNQLPLVacetylation[2]
265HILLFLPKSVSDYDGacetylation[4]
273SVSDYDGKLSSFKRAacetylation[2, 3, 4, 5, 7]
273SVSDYDGKLSSFKRAsuccinylation[3]
273SVSDYDGKLSSFKRAubiquitination[1]
278DGKLSSFKRAAEGFKacetylation[2, 8]
310ILEFFGLKKEECPAVubiquitination[1]
311LEFFGLKKEECPAVRacetylation[2]
328TLEEEMTKYKPESDEacetylation[2, 4]
330EEEMTKYKPESDELTacetylation[2, 4, 5]
340SDELTAEKITEFCHRacetylation[2, 4]
354RFLEGKIKPHLMSQEacetylation[2, 5]
368EVPEDWDKQPVKVLVacetylation[2, 3]
387EEVAFDEKKNVFVEFacetylation[2, 3]
387EEVAFDEKKNVFVEFubiquitination[1]
411QLAPIWDKLGETYKDacetylation[5]
417DKLGETYKDHENIIIacetylation[5]
446VHSFPTLKFFPASADacetylation[5]
446VHSFPTLKFFPASADubiquitination[1]
469ERTLDGFKKFLESGGacetylation[5]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [3] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [5] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [6] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [7] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [8] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405
Functional Description
 This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP (By similarity). 
Sequence Annotation
 DOMAIN 20 136 Thioredoxin 1.
 DOMAIN 348 477 Thioredoxin 2.
 MOTIF 506 509 Prevents secretion from ER.
 ACT_SITE 55 55 Nucleophile (By similarity).
 ACT_SITE 58 58 Nucleophile (By similarity).
 ACT_SITE 399 399 Nucleophile (By similarity).
 ACT_SITE 402 402 Nucleophile (By similarity).
 DISULFID 55 58 Redox-active (By similarity).
 DISULFID 399 402 Redox-active (By similarity).  
Keyword
 Cell membrane; Chaperone; Complete proteome; Disulfide bond; Endoplasmic reticulum; Isomerase; Membrane; Redox-active center; Reference proteome; Repeat; Signal. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 509 AA 
Protein Sequence
MLSRALLCLA LAWAARVGAD ALEEEDNVLV LKKSNFEEAL AAHKYLLVEF YAPWCGHCKA 60
LAPEYAKAAA KLKAEGSEIR LAKVDATEES DLAQQYGVRG YPTIKFFKNG DTASPKEYTA 120
GREADDIVNW LKKRTGPAAT TLSDTAAAES LVDSSEVTVI GFFKDVESDS AKQFLLAAEA 180
IDDIPFGITS NSGVFSKYQL DKDGVVLFKK FDEGRNNFEG EITKEKLLDF IKHNQLPLVI 240
EFTEQTAPKI FGGEIKTHIL LFLPKSVSDY DGKLSSFKRA AEGFKGKILF IFIDSDHTDN 300
QRILEFFGLK KEECPAVRLI TLEEEMTKYK PESDELTAEK ITEFCHRFLE GKIKPHLMSQ 360
EVPEDWDKQP VKVLVGANFE EVAFDEKKNV FVEFYAPWCG HCKQLAPIWD KLGETYKDHE 420
NIIIAKMDST ANEVEAVKVH SFPTLKFFPA SADRTVIDYN GERTLDGFKK FLESGGQDGA 480
GDDEDLDLEE ALEPDMEEDD DQKAVKDEL 509 
Gene Ontology
 GO:0009986; C:cell surface; IEA:Compara.
 GO:0005783; C:endoplasmic reticulum; IDA:MGI.
 GO:0005788; C:endoplasmic reticulum lumen; IEA:UniProtKB-SubCell.
 GO:0005793; C:endoplasmic reticulum-Golgi intermediate compartment; IEA:Compara.
 GO:0042470; C:melanosome; IEA:UniProtKB-SubCell.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0009055; F:electron carrier activity; IEA:InterPro.
 GO:0004656; F:procollagen-proline 4-dioxygenase activity; ISO:MGI.
 GO:0003756; F:protein disulfide isomerase activity; IEA:EC.
 GO:0015035; F:protein disulfide oxidoreductase activity; IEA:InterPro.
 GO:0045454; P:cell redox homeostasis; IEA:InterPro.
 GO:0006662; P:glycerol ether metabolic process; IEA:InterPro.
 GO:0018401; P:peptidyl-proline hydroxylation to 4-hydroxy-L-proline; ISO:MGI.
 GO:0006457; P:protein folding; IEA:GOC. 
Interpro
 IPR005788; Disulphide_isomerase.
 IPR005792; Prot_disulphide_isomerase.
 IPR005746; Thioredoxin.
 IPR012336; Thioredoxin-like_fold.
 IPR017937; Thioredoxin_CS.
 IPR013766; Thioredoxin_domain. 
Pfam
 PF00085; Thioredoxin 
SMART
  
PROSITE
 PS00014; ER_TARGET
 PS00194; THIOREDOXIN_1
 PS51352; THIOREDOXIN_2 
PRINTS
 PR00421; THIOREDOXIN.