CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-044781
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Clustered mitochondria protein homolog 
Protein Synonyms/Alias
  
Gene Name
 CLUH 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
907VVKHVNPKASDAFHFubiquitination[1, 2]
921FFQSGQAKVQQGFLKubiquitination[3]
1092VARVYESKAEFRSALubiquitination[2]
1103RSALQHEKEGYTIYKacetylation[4]
1128KESSEYLKCLTQQAVubiquitination[2]
1190QKDLENLKAEVARRHubiquitination[3, 5, 6, 7]
Reference
 [1] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [4] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [5] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [6] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [7] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931
Functional Description
 Involved in proper cytoplasmic distribution of mitochondria (By similarity). 
Sequence Annotation
 REPEAT 911 944 TPR 1 (By similarity).
 REPEAT 953 986 TPR 2 (By similarity).
 REPEAT 1037 1070 TPR 3 (By similarity).
 REPEAT 1079 1112 TPR 4 (By similarity).  
Keyword
 Complete proteome; Cytoplasm; Reference proteome; Repeat; TPR repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 1242 AA 
Protein Sequence
MVQEIHQVLM DREDTCHRTC FSLHLDGNVL DHFSELRSVE GLQEGSVLRV VEEPYTVREA 60
RIHVRHVRDL LKSLDPSDAF NGVDCNSLSF LSVFTDGDLG DSGKRKKGLE MDPIDCTPPE 120
YILPGSRERP LCPLQPQNRD WKPLQCLKVL TMSGWNPPPG NRKMHGDLMY LFVITAEDRQ 180
VSITASTRGF YLNQSTAYHF NPKPASPRFL SHSLVELLNQ ISPTFKKNFA VLQKKRVQRH 240
PFERIATPFQ VYSWTAPQAE HAMDCVRAED AYTSRLGYEE HIPGQTRDWN EELQTTRELP 300
RKNLPERLLR ERAIFKVHSD FTAAATRGAM AVIDGNVMAI NPSEETKMQM FIWNNIFFSL 360
GFDVRDHYKD FGGDVAAYVA PTNDLNGVRT YNAVDVEGLY TLGTVVVDYR GYRVTAQSII 420
PGILERDQEQ SVIYGSIDFG KTVVSHPRYL ELLERTSRPL KILRHQVLND RDEEVELCSS 480
VECKGIIGND GRHYILDLLR TFPPDLNFLP VPGEELPEEC ARAGFPRAHR HKLCCLRQEL 540
VDAFVEHRYL LFMKLAALQL MQQNASQLET PSSLENGGPS SLESKSEDPP GQEAGSEEEG 600
SSASGLAKVK ELAETIAADD GTADPRSREV IRNACKAVGS ISSTAFDIRF NPDIFSPGVR 660
FPESCQDEVR DQKQLLKDAA AFLLSCQIPG LVKDCMEHAV LPVDGATLAE VMRQRGINMR 720
YLGKVLELVL RSPARHQLDH VFKIGIGELI TRSAKHIFKT YLQGVELSGL SAAISHFLNC 780
FLSSYPNPVA HLPADELVSK KRNKRRKNRP PGAADNTAWA VMTPQELWKN ICQEAKNYFD 840
FDLECETVDQ AVETYGLQKI TLLREISLKT GIQVLLKEYS FDSRHKPAFT EEDVLNIFPV 900
VKHVNPKASD AFHFFQSGQA KVQQGFLKEG CELINEALNL FNNVYGAMHV ETCACLRLLA 960
RLHYIMGDYA EALSNQQKAV LMSERVMGTE HPNTIQEYMH LALYCFASSQ LSTALSLLYR 1020
ARYLMLLVFG EDHPEMALLD NNIGLVLHGV MEYDLSLRFL ENALAVSTKY HGPKALKVAL 1080
SHHLVARVYE SKAEFRSALQ HEKEGYTIYK TQLGEDHEKT KESSEYLKCL TQQAVALQRT 1140
MNEIYRNGSS ANIPPLKFTA PSMASVLEQL NVINGILFIP LSQKDLENLK AEVARRHQLQ 1200
EASRNRDRAE EPMATEPAPA GAPGDLGSQP PAAKDPSPSV QG 1242 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0048312; P:intracellular distribution of mitochondria; IEA:InterPro. 
Interpro
 IPR027523; CLU.
 IPR025697; CLU_dom.
 IPR023231; GSKIP/TIF31_domain.
 IPR011990; TPR-like_helical. 
Pfam
 PF13236; CLU 
SMART
  
PROSITE
  
PRINTS