CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021312
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Diphthine synthase 
Protein Synonyms/Alias
 Diphthamide biosynthesis methyltransferase 
Gene Name
 DPH5 
Gene Synonyms/Alias
 AD-018; CGI-30; HSPC143; NPD015 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
18DAKDITVKGLEVVRRubiquitination[1, 2, 3]
100DLVLRATKLGIPYRVubiquitination[2, 3, 4]
126CCGLQLYKFGETVSIubiquitination[1]
177QSLENLIKGRKIYEPubiquitination[1, 3]
180ENLIKGRKIYEPPRYubiquitination[1]
231RVGADDQKIAAGTLRubiquitination[1, 2, 4, 5]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [3] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [4] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [5] Proteome-wide identification of ubiquitylation sites by conjugation of engineered lysine-less ubiquitin.
 Oshikawa K, Matsumoto M, Oyamada K, Nakayama KI.
 J Proteome Res. 2012 Feb 3;11(2):796-807. [PMID: 22053931
Functional Description
 S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF- 2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis (By similarity). 
Sequence Annotation
 REGION 112 113 S-adenosyl-L-methionine binding (By
 BINDING 9 9 S-adenosyl-L-methionine; via carbonyl
 BINDING 84 84 S-adenosyl-L-methionine; via amide
 BINDING 87 87 S-adenosyl-L-methionine; via carbonyl
 BINDING 163 163 S-adenosyl-L-methionine; via amide
 BINDING 225 225 S-adenosyl-L-methionine; via amide
 BINDING 250 250 S-adenosyl-L-methionine; via carbonyl  
Keyword
 Alternative splicing; Complete proteome; Methyltransferase; Reference proteome; S-adenosyl-L-methionine; Transferase. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 285 AA 
Protein Sequence
MLYLIGLGLG DAKDITVKGL EVVRRCSRVY LEAYTSVLTV GKEALEEFYG RKLVVADREE 60
VEQEADNILK DADISDVAFL VVGDPFGATT HSDLVLRATK LGIPYRVIHN ASIMNAVGCC 120
GLQLYKFGET VSIVFWTDTW RPESFFDKVK KNRQNGMHTL CLLDIKVKEQ SLENLIKGRK 180
IYEPPRYMSV NQAAQQLLEI VQNQRIRGEE PAVTEETLCV GLARVGADDQ KIAAGTLRQM 240
CTVDLGEPLH SLIITGGSIH PMEMEMLSLF SIPENSSESQ SINGL 285 
Gene Ontology
 GO:0004164; F:diphthine synthase activity; NAS:UniProtKB.
 GO:0017183; P:peptidyl-diphthamide biosynthetic process from peptidyl-histidine; NAS:UniProtKB. 
Interpro
 IPR000878; 4pyrrol_Mease.
 IPR014777; 4pyrrole_Mease_sub1.
 IPR014776; 4pyrrole_Mease_sub2.
 IPR004551; Dphthn_synthase. 
Pfam
 PF00590; TP_methylase 
SMART
  
PROSITE
  
PRINTS