CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-029927
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Protein Vps13d 
Protein Synonyms/Alias
  
Gene Name
 Vps13d 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
186AANEPVQKLMRKKRLubiquitination[1]
911SDTQIREKIFPQEGPubiquitination[1]
2124FVPSASIKQRGQQAVubiquitination[1]
3943YDENIHEKTAEQGGTubiquitination[1]
3975LSVFTSNKLPLDLKAubiquitination[1]
3981NKLPLDLKALKSTLGubiquitination[1]
3984PLDLKALKSTLGFPLubiquitination[1]
4013RVHPYETKEFIINDIubiquitination[1]
4082GVSNSAAKFAGTLSDubiquitination[1]
4093TLSDGLGKTMDNRHQubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 4359 AA 
Protein Sequence
MLEGLVAWVL NTYLGKYVNN LNTDQLSVAL LKGAVELENL PLKKDALKEL ELPFEVKAGL 60
IGKVTLQIPF YRPHVDPWVI SISGLHVIGG PEKIQDFNDE KEKLLERERK KALLQALEER 120
WKKGEPYWYS VTASVVTRIV ENIELKIQDV HLRFEDGVTN PSRPFAFGIC IKNVSMQNAA 180
NEPVQKLMRK KRLDVAEFSI YWDVNCTLLG DLPQAELQEA MARSMESRSH HYILEPVCAS 240
ALLKRNCSKE PLRSRHSPRI ECDIQLETIP LKLSQLQYRQ IMAFLKELER KERQLKFRKW 300
KPKVAVSKNC REWWYFALNA NLYEIREQRK CWTWDFLLHR ARDAVFYTDR YFNKLKGGVL 360
SADDKEEMCR IEEEQSFEEL KILRELVHDR FYKQEELAES LREPQFDSPG TSPGDPDGSG 420
GSGMLQYLQS WFPGWGGWYG QQSPEGKVVE GLTAESHEHW TPEEILGTEE FFDPTADASC 480
MNTYTKRDHV FAKLNVQLQR GTVTLLHKEQ GTAHANESAF MQLEFSDVKL LAESLPRRNS 540
SLLLVRLGGL FLRDLATEGT MFPLLVFPNP QKEVGRVSQS FGLQTASEDR SDQYSAADPD 600
NPVFEMLYER NPVHSHFERR LHVSTRPLNI IYNPQAIKKV ADFFYKGKVH TSGFGYQSEL 660
ELRVAEAARR QYDKLKVQTK AEIRQTLDRL LVGDFIEESK RWTVRLDISA PQVIFPDDFT 720
FKNPVLVVVD LGRMLLTNTQ EDSRRKSGDG SASEENQFSD DEYKTPLATP PSTPPPETSS 780
SNGEKTPPFS GVEFSEEQLQ AHLMSTQMYE RYSLTFMDLQ VMVGRVRDNW KRVQDIDVGP 840
THVVEKFNVH LQLERRLIYT SDPKYPGAVL SGNLPDLKIH INEDKISALK NCFALLTTPE 900
TKPSDTQIRE KIFPQEGPRG SLQDSVMNLT QSIVMLEQHT REVLVESQLL LAEFKVNCMQ 960
LGVESSGRYI SVLKVFGTNA HFVKRPYDAE VSLTVHGLLL VDTMQTYGAD FDLLMASHKN 1020
LSFDIPTGSL RDSRAQSPVS GPNVAFQTDV TTLNDQSATS VSLEKILTKE QESLIKLEYQ 1080
FVSSECPSMN LDSTLQVISL QVNNLDIILN PETIVELIGF LQKSFPKEKD DVSPQPLMTD 1140
LERSIVEQGT IQSTYEQNTE VAVEIHRLNL LLLRTVGMAD GERHGRKIAT ASIGGTKVNV 1200
SMGSSFDMNG SLGCLQLMDL TQENVKSQYV VSIGNSVGYE NIVSDIGYFE SVFVRMEDAA 1260
LTEALSFTFA EKSKQECFLN LKMASLHYNH SAKFLKELTL SMDELEENFR SMLKSAATKV 1320
TTVLATKTAE YSEMVSLFET PKKTREPFVL EENEIYGFGL PSPRSDTVKL ILNINIESPV 1380
VSIPRRPGSP ELLVGHLGQI FIQNFVAGDD DSRSDRLQVE IKDIKLYSLN CTQLAGRDNA 1440
GPEVNRTFCP PSGLASVNSQ EEAHFTRHDF FESLHRGQAF HILNNTTIQF KLEKIPIERE 1500
SELTFSLSPD ELGTSSIMKI EGKFVNPVQV VLAKHVYEQV LQTMDNLVYS EDLNKFAASA 1560
PTSPCPNSPL PQLSSCGEPC VEKKENGLFS HSSFSSTSQK SLSVKEAKAF TQIQANFCIS 1620
ELQVQLSGDL TLGAQGLVSL KFQDFEVEFS KDHPQTLSIQ IALRSLLMED LLEKNPDSKY 1680
KSLMVSRGAP KPSSLAQKEY LSQSCPSVSS VEYPDMPRSL PSHMEEAPNV FQLYQRPIST 1740
CRKKPKEAQD KSYPQTPPPS PSVDEPNMLV GKSKFDDSLV HINIFLVDKK HPEFSSSYGR 1800
INRSIDVDFN CLDVLITLQT WVVILDFFGI GSTADNHAMK VPPEGLLQNV KAESSASMES 1860
EHQEPVNSKL DLKVHSLSLV LSKATSELAK ANVSKLMAHM EMIEGDLALQ GSIGSLSLSD 1920
LTPHGDFYRE RFTTSGEEAL IFQTFKYGQP DPLLQREHDI RVSLQMASVQ YVHTQRFQAE 1980
VVAFIQHFTQ LQDILGRQRA AIEGQTVRDQ AQRCSRILLD IEAGAPVLLI PESSRSNNLI 2040
VANLGKLKVK NKFLFAGFPG TFSLQDKESV PSASPAGTPK HSMRKMTTTE DPKGPQVQGL 2100
FMMPPAGVGL GSLKSDFVPS ASIKQRGQQA VPPVSQSSSS PEDHVCLLDC IVVDLQDMDI 2160
FAAERHPREG SKASEHSSGD LIFPSYFVRQ TGGSLLTEPC RLKLQVERNL DKEISHTVAD 2220
ISVHGSLSSV HCSLDLCKYK LIRGLLENNL GEPIEDFMRP YDLQDPRIHT VLSGEVYTCM 2280
CFLIDMVNVS LELKDPKGKE GTGSLARFDF KKCKLLYESF SNQTKSINLV SHSMMAFDTR 2340
YSGQKPSHGM TNVFNCIFQP SKSSSATQGS IQIELHFRST KDSSCFTVVL NNLRVFLIFD 2400
WLLLVHDFLH TPSDIKKQNV TPARHRNASS ESAVVPKTVK SGVVTKRSSL PVSNERHLEV 2460
KVNVTGTEFV VVEDVSCFDT NAIILKGTTV LTYKPRFVDR PFSGSLFGIE VFSCRLGNEQ 2520
DTALSIVDPV QIQVELVGNS SYQNSSGLMD AFNSEDFPPI LEIQLQALDI RLSYNDVQLF 2580
LAIAKSIPEQ ASAAAPDSSA LEVDSISCSL PGASRIGEDV REGSRHTLDP VLELQLARLQ 2640
ELGFSMDDCR KALLVCQGQL KKAASWLFKN AEPLKSLSLV SSSSRDNPGT MPAPRISGVE 2700
VKAESVCICF IDDCMDCDVP LAELTFSRLN FLQHIRTNPE GFAHFTLSGD YYNRALSGWE 2760
PFIEPWPCSV SWQQQASSRL HPPRLKLEAK AKRRLDINIT SVLIDQYIST KESWLADYCK 2820
EDKETESAKT EDWMGSSVDP PCFGQTEVKT PKRRQPFVPF ALRNHTGCTL WFATLTTTPT 2880
RAALSHSGSP GVVPEGNGAF LDDAHNVSEW REVLTGEEIP FEFEARGKLR HRHTHDLRIH 2940
QLQVRVNGWE QVSPVSVDKV GTFFRYAAPD KNSSSSTIGS PSSRTNIIHP QVYFSSLPPV 3000
RVVFAVTMEG SARKVITVRS ALIVKNRLET PMELRLDSPS APDKPVVLPA IMPGDSFAVP 3060
LHLTSWRLQA RPKGMGVFFC KVPIHWTNVV KTAEVSSSKR ECHSMDTEKS RFFRFCVAIK 3120
KENYPDYMPS NIFSDSAKQI FRQPGHTIYL LPTVVICNLL PCELDFYVKG MPINGTLKPG 3180
KEAALPTADT SQNIELGVSL ENFPLCKELL IPPGTQNYMV RMRLYDVNRR QLNLTIRIAC 3240
RAEGSLKIFI SAPYWLINKT GLPLIFRQDN AKTDAAGQFE EHELARSLSP LLFCYADKEQ 3300
PNLCTMRIGR GIHPEGMPGW CQGFSLDGGS GVRALKVIQQ GNRPGLIYNI GIDVKKGRGR 3360
YIDTCMVIFA PRYLLDNKSS HKLAFAQREF ARGQGTANPN GYISTLPGSS VVFHWPRNDY 3420
DQLLCVRLMD VPNCIWSGGF EVNKNNSFHI NMRDTLGKCF FLRVEITLRG ATYRISFSDT 3480
DQLPPPFRID NFSKVPVVFT QHGVAEPRLR TEVKPMMSLD YAWDEPTLPP FITLTVKGAG 3540
SSEINCNMND FQNNRQLYYE NFIYIAATYT FSGLQEGKGR PVASHKAITC AELVLDVSPK 3600
TQRVILKKKE PGKRSQLWRM TGTGMLAHEG SAVPHNPNKP SATRSIEGSA ILDIAGLAAV 3660
TDNRYEPLML RKPDRRRSTT QTWSFHEGKL TCGLHGLVVQ AKGGLSGLFD GAEVVLGPDS 3720
SMELLGPVPP EQQFANQKMR PGSGMLSIRV IPDGPTRALQ ITDFCQRKSE RSSYEVEELP 3780
VTEQELQKLR NPDTHQELEV LVRLEGGVGV SLINKVPEEL VFASLTGINI HYTQLAASHM 3840
LELSIQDVQV DNQLIGTTQP FMLYVTPLSN ENEVIETGPA VQVNAVKFPS KSALTNIYKH 3900
LMVTAQRFTV QIEEKLLLKL LSFFGYDQAE SEVEKYDENI HEKTAEQGGT PTRYYFENLK 3960
ISIPQIKLSV FTSNKLPLDL KALKSTLGFP LIRFEDAVIN LDPFTRVHPY ETKEFIINDI 4020
LKHFQEELLS QAARILGSVD FLGNPMGLLN DVSEGVTGLI KYGNVGGLIR NVTHGVSNSA 4080
AKFAGTLSDG LGKTMDNRHQ SEREYIRYHA ATSGEHLVAG IHGLAHGIIG GLTSVITSTV 4140
EGVKTEGGVS GFISGLGKGL VGTVTKPVAG ALDFASETAQ AVRDTATLSG PRTQAQRVRK 4200
PRCCTGPQGL LPRYSESQAE GQEQLFKLTD NIQDEFFIAV ENIDSYCVLI SSKAVYFLKS 4260
GDYVDREAIF LEVKYDDLYH CLVSKDHGKV YVQVTKKAAN SSSGVSIPGP SHQKPMVHVK 4320
SEVLAVKLSQ EINYAKSLYY EQQLMLRLSE NQEQLELDS 4359 
Gene Ontology
  
Interpro
 IPR009060; UBA-like.
 IPR000449; UBA/transl_elong_EF1B_N.
 IPR015940; UBA/transl_elong_EF1B_N_euk.
 IPR026847; VPS13.
 IPR026854; VPS13A_N.
 IPR009543; VPSAP_dom. 
Pfam
 PF12624; Chorein_N
 PF06650; DUF1162
 PF00627; UBA 
SMART
 SM00165; UBA 
PROSITE
 PS50030; UBA 
PRINTS