CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-030480
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA excision repair protein ERCC-8 
Protein Synonyms/Alias
 cDNA FLJ32369 fis, clone PUAEN1000276, highly similar to DNA excision repair protein ERCC-8 
Gene Name
 ERCC8 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
67SSFDKTLKVWDTNTLubiquitination[1]
109AVGTRGPKVQLCDLKubiquitination[1]
154ASADSRVKLWDVRRAacetylation[2]
154ASADSRVKLWDVRRAubiquitination[1]
175LDQHNGKKSQAVESAubiquitination[3]
189ANTAHNGKVNGLCFTubiquitination[1]
228NTLVNYGKVCNNSKKubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302]
 [3] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Repeat; WD repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 338 AA 
Protein Sequence
MLSGGSDGVI VLYDLENSSR QSYYTCKAVC SIGRDHPDVH RYSVETVQWY PHDTGMFTSS 60
SFDKTLKVWD TNTLQTADVF NFEETVYSHH MSPVSTKHCL VAVGTRGPKV QLCDLKSGSC 120
SHILQGHRQE ILAVSWSPRY DYILATASAD SRVKLWDVRR ASGCLITLDQ HNGKKSQAVE 180
SANTAHNGKV NGLCFTSDGL HLLTVGTDNR MRLWNSSNGE NTLVNYGKVC NNSKKGLKFT 240
VSCGCSSEFV FVPYGSTIAV YTVYSGEQIT MLKGHYKTVD CCVFQSNFQE LYSGSRDCNI 300
LAWVPSLYEP VPDDDETTTK SQLNPAFEDA WSSSDEEG 338 
Gene Ontology
 GO:0009411; P:response to UV; IEA:Compara.
 GO:0010165; P:response to X-ray; IEA:Compara. 
Interpro
 IPR020472; G-protein_beta_WD-40_rep.
 IPR015943; WD40/YVTN_repeat-like_dom.
 IPR001680; WD40_repeat.
 IPR019775; WD40_repeat_CS.
 IPR017986; WD40_repeat_dom. 
Pfam
 PF00400; WD40 
SMART
 SM00320; WD40 
PROSITE
 PS00678; WD_REPEATS_1
 PS50082; WD_REPEATS_2
 PS50294; WD_REPEATS_REGION 
PRINTS
 PR00320; GPROTEINBRPT.