CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002332
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Alpha-galactosidase A 
Protein Synonyms/Alias
 Alpha-D-galactosidase A; Alpha-D-galactoside galactohydrolase; Melibiase; Agalsidase 
Gene Name
 GLA 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
185ENLADGYKHMSLALNubiquitination[1]
237ADIDDSWKSIKSILDubiquitination[2, 3, 4]
240DDSWKSIKSILDWTSubiquitination[1, 2, 3, 4, 5, 6, 7]
308RHISPQAKALLQDKDubiquitination[1, 2]
314AKALLQDKDVIAINQubiquitination[1, 2, 3]
326INQDPLGKQGYQLRQubiquitination[1, 2, 3, 4, 5, 7]
391ITQLLPVKRKLGFYEubiquitination[1, 3]
393QLLPVKRKLGFYEWTubiquitination[3, 5, 7]
Reference
 [1] Global identification of modular cullin-RING ligase substrates.
 Emanuele MJ, Elia AE, Xu Q, Thoma CR, Izhar L, Leng Y, Guo A, Chen YN, Rush J, Hsu PW, Yen HC, Elledge SJ.
 Cell. 2011 Oct 14;147(2):459-74. [PMID: 21963094]
 [2] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [4] Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
 Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW.
 Nature. 2013 Apr 18;496(7445):372-6. [PMID: 23503661]
 [5] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [6] Ubiquitin ligase substrate identification through quantitative proteomics at both the protein and peptide levels.
 Lee KA, Hammerle LP, Andrews PS, Stokes MP, Mustelin T, Silva JC, Black RA, Doedens JR.
 J Biol Chem. 2011 Dec 2;286(48):41530-8. [PMID: 21987572]
 [7] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
  
Sequence Annotation
 REGION 203 207 Substrate binding.
 ACT_SITE 170 170 Nucleophile (By similarity).
 ACT_SITE 231 231 Proton donor (By similarity).
 CARBOHYD 139 139 N-linked (GlcNAc...).
 CARBOHYD 192 192 N-linked (GlcNAc...).
 CARBOHYD 215 215 N-linked (GlcNAc...).
 CARBOHYD 408 408 N-linked (GlcNAc...) (Potential).
 DISULFID 52 94
 DISULFID 56 63
 DISULFID 142 172
 DISULFID 202 223
 DISULFID 378 382  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Disease mutation; Disulfide bond; Glycoprotein; Glycosidase; Hydrolase; Lysosome; Pharmaceutical; Reference proteome; RNA editing; Signal. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 429 AA 
Protein Sequence
MQLRNPELHL GCALALRFLA LVSWDIPGAR ALDNGLARTP TMGWLHWERF MCNLDCQEEP 60
DSCISEKLFM EMAELMVSEG WKDAGYEYLC IDDCWMAPQR DSEGRLQADP QRFPHGIRQL 120
ANYVHSKGLK LGIYADVGNK TCAGFPGSFG YYDIDAQTFA DWGVDLLKFD GCYCDSLENL 180
ADGYKHMSLA LNRTGRSIVY SCEWPLYMWP FQKPNYTEIR QYCNHWRNFA DIDDSWKSIK 240
SILDWTSFNQ ERIVDVAGPG GWNDPDMLVI GNFGLSWNQQ VTQMALWAIM AAPLFMSNDL 300
RHISPQAKAL LQDKDVIAIN QDPLGKQGYQ LRQGDNFEVW ERPLSGLAWA VAMINRQEIG 360
GPRSYTIAVA SLGKGVACNP ACFITQLLPV KRKLGFYEWT SRLRSHINPT GTVLLQLENT 420
MQMSLKDLL 429 
Gene Ontology
 GO:0005576; C:extracellular region; IDA:UniProtKB.
 GO:0005794; C:Golgi apparatus; IMP:UniProtKB.
 GO:0043202; C:lysosomal lumen; TAS:Reactome.
 GO:0004557; F:alpha-galactosidase activity; IDA:UniProtKB.
 GO:0016936; F:galactoside binding; IEA:Compara.
 GO:0042803; F:protein homodimerization activity; IDA:UniProtKB.
 GO:0052692; F:raffinose alpha-galactosidase activity; IEA:EC.
 GO:0005102; F:receptor binding; IDA:UniProtKB.
 GO:0016139; P:glycoside catabolic process; IBA:RefGenome.
 GO:0046477; P:glycosylceramide catabolic process; ISS:UniProtKB.
 GO:0045019; P:negative regulation of nitric oxide biosynthetic process; ISS:UniProtKB.
 GO:0051001; P:negative regulation of nitric-oxide synthase activity; ISS:UniProtKB.
 GO:0009311; P:oligosaccharide metabolic process; IDA:UniProtKB.
 GO:0044281; P:small molecule metabolic process; TAS:Reactome. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR013780; Glyco_hydro_13_b.
 IPR002241; Glyco_hydro_27.
 IPR000111; Glyco_hydro_GHD.
 IPR017853; Glycoside_hydrolase_SF. 
Pfam
 PF02065; Melibiase 
SMART
  
PROSITE
 PS00512; ALPHA_GALACTOSIDASE 
PRINTS
 PR00740; GLHYDRLASE27.