CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-009248
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Pyridoxal biosynthesis lyase PdxS 
Protein Synonyms/Alias
  
Gene Name
 pdxS 
Gene Synonyms/Alias
 Rv2606c; MT2681; MTCY1A10.27 
Created Date
 July 27, 2013 
Organism
 Mycobacterium tuberculosis 
NCBI Taxa ID
 1773 
Lysine Modification
Position
Peptide
Type
References
271DDPDVLAKVSRGLGEpupylation[1]
Reference
 [1] Prokaryotic ubiquitin-like protein (Pup) proteome of Mycobacterium tuberculosis [corrected] .
 Festa RA, McAllister F, Pearce MJ, Mintseris J, Burns KE, Gygi SP, Darwin KH.
 PLoS One. 2010 Jan 6;5(1):e8589. [PMID: 20066036
Functional Description
 Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring (By similarity). 
Sequence Annotation
 CROSSLNK 271 271 Isoglutamyl lysine isopeptide (Lys-Gln)  
Keyword
 3D-structure; Complete proteome; Isopeptide bond; Lyase; Pyridoxal phosphate; Reference proteome; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 299 AA 
Protein Sequence
MDPAGNPATG TARVKRGMAE MLKGGVIMDV VTPEQARIAE GAGAVAVMAL ERVPADIRAQ 60
GGVSRMSDPD MIEGIIAAVT IPVMAKVRIG HFVEAQILQT LGVDYIDESE VLTPADYAHH 120
IDKWNFTVPF VCGATNLGEA LRRISEGAAM IRSKGEAGTG DVSNATTHMR AIGGEIRRLT 180
SMSEDELFVA AKELQAPYEL VAEVARAGKL PVTLFTAGGI ATPADAAMMM QLGAEGVFVG 240
SGIFKSGAPE HRAAAIVKAT TFFDDPDVLA KVSRGLGEAM VGINVDEIAV GHRLAQRGW 299 
Gene Ontology
 GO:0005886; C:plasma membrane; IDA:MTBBASE.
 GO:0016843; F:amine-lyase activity; IDA:MTBBASE.
 GO:0040007; P:growth; IDA:MTBBASE.
 GO:0042823; P:pyridoxal phosphate biosynthetic process; IDA:MTBBASE. 
Interpro
 IPR013785; Aldolase_TIM.
 IPR011060; RibuloseP-bd_barrel.
 IPR001852; Snz1p/Sor1. 
Pfam
 PF01680; SOR_SNZ 
SMART
  
PROSITE
 PS01235; PDXS_SNZ_1
 PS51129; PDXS_SNZ_2 
PRINTS