CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001753
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Dihydrofolate reductase 
Protein Synonyms/Alias
  
Gene Name
 Dhfr 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
33PPLRNEFKYFQRMTTacetylation[1, 2]
33PPLRNEFKYFQRMTTsuccinylation[2]
92RGAHFLAKSLDDALRacetylation[1]
174LSEVQEEKGIKYKFEacetylation[2, 3, 4]
174LSEVQEEKGIKYKFEubiquitination[5]
Reference
 [1] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [2] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [3] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [4] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [5] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
 Key enzyme in folate metabolism. Contributes to the de novo mitochondrial thymidylate biosynthesis pathway. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. Binds its own mRNA and that of DHFRL1. 
Sequence Annotation
 DOMAIN 4 185 DHFR.
 NP_BIND 16 22 NADP.
 NP_BIND 55 57 NADP.
 NP_BIND 77 79 NADP.
 NP_BIND 117 124 NADP.
 REGION 31 36 Substrate binding.
 BINDING 10 10 NADP; via amide nitrogen and carbonyl
 BINDING 71 71 Substrate.  
Keyword
 3D-structure; Complete proteome; Direct protein sequencing; Methotrexate resistance; NADP; One-carbon metabolism; Oxidoreductase; Reference proteome; RNA-binding. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 187 AA 
Protein Sequence
MVRPLNCIVA VSQNMGIGKN GDLPWPPLRN EFKYFQRMTT TSSVEGKQNL VIMGRKTWFS 60
IPEKNRPLKD RINIVLSREL KEPPRGAHFL AKSLDDALRL IEQPELASKV DMVWIVGGSS 120
VYQEAMNQPG HLRLFVTRIM QEFESDTFFP EIDLGKYKLL PEYPGVLSEV QEEKGIKYKF 180
EVYEKKD 187 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0004146; F:dihydrofolate reductase activity; ISS:UniProtKB.
 GO:0051871; F:dihydrofolic acid binding; IEA:Compara.
 GO:0008144; F:drug binding; ISS:UniProtKB.
 GO:0003729; F:mRNA binding; ISS:UniProtKB.
 GO:0050661; F:NADP binding; IEA:Compara.
 GO:0046452; P:dihydrofolate metabolic process; IEA:Compara.
 GO:0006545; P:glycine biosynthetic process; IEA:InterPro.
 GO:0009165; P:nucleotide biosynthetic process; IEA:InterPro.
 GO:0006730; P:one-carbon metabolic process; IEA:UniProtKB-KW.
 GO:0031427; P:response to methotrexate; IEA:UniProtKB-KW.
 GO:0035094; P:response to nicotine; IEA:Compara.
 GO:0046654; P:tetrahydrofolate biosynthetic process; IEA:UniProtKB-UniPathway.
 GO:0046653; P:tetrahydrofolate metabolic process; ISS:UniProtKB. 
Interpro
 IPR012259; DHFR.
 IPR024072; DHFR-like_dom.
 IPR017925; DHFR_CS.
 IPR001796; DHFR_dom. 
Pfam
 PF00186; DHFR_1 
SMART
  
PROSITE
 PS00075; DHFR_1
 PS51330; DHFR_2 
PRINTS
 PR00070; DHFR.