CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-018678
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Leucine-rich repeat-containing protein 59 
Protein Synonyms/Alias
  
Gene Name
 Lrrc59 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
40KELAALPKATVLDLSubiquitination[1]
73KLDLSKNKLQQLPADacetylation[2, 3, 4, 5, 6, 7]
73KLDLSKNKLQQLPADsuccinylation[6]
73KLDLSKNKLQQLPADubiquitination[1]
108PVSFAQLKNLKWLDLacetylation[3, 8]
108PVSFAQLKNLKWLDLubiquitination[1]
111FAQLKNLKWLDLKDNacetylation[8]
116NLKWLDLKDNPLDPVacetylation[8]
116NLKWLDLKDNPLDPVubiquitination[1]
126PLDPVLAKVAGDCLDubiquitination[1]
135AGDCLDEKQCKQCANacetylation[3, 6, 7]
135AGDCLDEKQCKQCANubiquitination[1]
143QCKQCANKVLQHMKAacetylation[3]
149NKVLQHMKAVQADQEacetylation[3, 6]
149NKVLQHMKAVQADQEsuccinylation[6]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [2] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [3] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [4] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377]
 [5] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [6] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [7] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [8] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441
Functional Description
 Required for nuclear import of FGF1, but not that of FGF2. Might regulate nuclear import of exogenous FGF1 by facilitating interaction with the nuclear import machinery and by transporting cytosolic FGF1 to, and possibly through, the nuclear pores (By similarity). 
Sequence Annotation
 REPEAT 10 31 LRR 1.
 REPEAT 40 62 LRR 2.
 REPEAT 63 84 LRR 3.
 REPEAT 86 107 LRR 4.
 REPEAT 109 128 LRR 5.
 MOD_RES 23 23 Phosphoserine (By similarity).
 MOD_RES 25 25 Phosphoserine (By similarity).  
Keyword
 Coiled coil; Complete proteome; Endoplasmic reticulum; Leucine-rich repeat; Membrane; Microsome; Nucleus; Phosphoprotein; Reference proteome; Repeat; Signal-anchor; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 307 AA 
Protein Sequence
MTKAGSKGGN LRDKLDGNEL DLSLSDLNEV PVKELAALPK ATVLDLSCNK LSTLPSDFCG 60
LTHLVKLDLS KNKLQQLPAD FGRLVNLQHL DLLNNRLVTL PVSFAQLKNL KWLDLKDNPL 120
DPVLAKVAGD CLDEKQCKQC ANKVLQHMKA VQADQERERQ RRLEVEREAE KKREAKQQAK 180
EAKERELRKR EKAEEKERRR KEYDAQKASK REQEKKPKKE ANQAPKSKSG SRPRKPPPRK 240
HTRSWAVLKV LLLLLLLCVA GGLVVCRVTG LHQQPLCTSV NTIYDNAVQG LRHHEILQWV 300
LQTDSQQ 307 
Gene Ontology
 GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0042645; C:mitochondrial nucleoid; IEA:Compara.
 GO:0005635; C:nuclear envelope; IEA:UniProtKB-SubCell. 
Interpro
 IPR001611; Leu-rich_rpt. 
Pfam
 PF00560; LRR_1 
SMART
  
PROSITE
 PS51450; LRR 
PRINTS