CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-026367
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Protein Smarcd3 
Protein Synonyms/Alias
 RCG24403, isoform CRA_a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 
Gene Name
 Smarcd3 
Gene Synonyms/Alias
 rCG_24403 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
135VDIQEALKRPMKQKRacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 470 AA 
Protein Sequence
MSPGVQHPPT VVQRPGMPSG ARMPHQGAPM GPPGSPYMGS PAVRPGLAPA GMEPARKRAA 60
PPPGQSQAQG QGQPVPTAPA RSRSAKRRKM ADKILPQRIR ELVPESQAYM DLLAFERKLD 120
QTIMRKRVDI QEALKRPMKQ KRKLRLYISN TFNPAKPDAE DSDGSIASWE LRVEGKLLDD 180
PSKQKRKFSS FFKSLVIELD KDLYGPDNHL VEWHRTPTTQ ETDGFQVKRP GDLSVRCTLL 240
LMLDYQPPQF KLDPRLARLL GLHTQSRSAI VQALWQYVKT NRLQDSHDKE YINGDKYFQQ 300
IFDCPRLKFS EIPQRLTGLL LPPDPIVINH VISVDPSDQK KTACYDIDVE VEEPLKGQMS 360
SFLLSTANQQ EISALDSKIH ETIESINQLK IQRDFMLSFS RDPKGYVQDL LRSQSRDLKV 420
MTDVAGNPEE ERRAEFYHQP WSQEAVSRYF YCKIQQRRQE LEQSLVVRNT 470 
Gene Ontology
 GO:0005737; C:cytoplasm; IEA:Compara.
 GO:0071565; C:nBAF complex; IEA:Compara.
 GO:0071564; C:npBAF complex; IEA:Compara.
 GO:0000790; C:nuclear chromatin; IEA:Compara.
 GO:0030374; F:ligand-dependent nuclear receptor transcription coactivator activity; IEA:Compara.
 GO:0003219; P:cardiac right ventricle formation; IEA:Compara.
 GO:0006338; P:chromatin remodeling; IEA:Compara.
 GO:0042692; P:muscle cell differentiation; IEA:Compara.
 GO:0003407; P:neural retina development; IEA:Compara.
 GO:0006337; P:nucleosome disassembly; IEA:Compara.
 GO:0002052; P:positive regulation of neuroblast proliferation; IEA:Compara.
 GO:0045893; P:positive regulation of transcription, DNA-dependent; IEA:Compara.
 GO:0043393; P:regulation of protein binding; IEA:Compara.
 GO:0003139; P:secondary heart field specification; IEA:Compara.
 GO:0006351; P:transcription, DNA-dependent; IEA:Compara. 
Interpro
 IPR019835; SWIB_domain.
 IPR003121; SWIB_MDM2_domain. 
Pfam
 PF02201; SWIB 
SMART
 SM00151; SWIB 
PROSITE
  
PRINTS