CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-021241
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Haloacid dehalogenase-like hydrolase domain-containing protein 2 
Protein Synonyms/Alias
  
Gene Name
 HDHD2 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
53TNTTKESKQDLLERLubiquitination[1]
145APLIAIHKARYYKRKubiquitination[1]
182TVVGKPEKTFFLEALubiquitination[1, 2, 3]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
  
Sequence Annotation
 REGION 13 15 Substrate binding (By similarity).
 REGION 46 47 Substrate binding (By similarity).
 METAL 13 13 Magnesium (By similarity).
 METAL 15 15 Magnesium; via carbonyl oxygen (By
 METAL 204 204 Magnesium (By similarity).
 BINDING 179 179 Substrate (By similarity).  
Keyword
 3D-structure; Alternative splicing; Coiled coil; Complete proteome; Direct protein sequencing; Magnesium; Metal-binding; Polymorphism; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 259 AA 
Protein Sequence
MAACRALKAV LVDLSGTLHI EDAAVPGAQE ALKRLRGASV IIRFVTNTTK ESKQDLLERL 60
RKLEFDISED EIFTSLTAAR SLLERKQVRP MLLVDDRALP DFKGIQTSDP NAVVMGLAPE 120
HFHYQILNQA FRLLLDGAPL IAIHKARYYK RKDGLALGPG PFVTALEYAT DTKATVVGKP 180
EKTFFLEALR GTGCEPEEAV MIGDDCRDDV GGAQDVGMLG ILVKTGKYRA SDEEKINPPP 240
YLTCESFPHA VDHILQHLL 259 
Gene Ontology
 GO:0016787; F:hydrolase activity; IEA:InterPro.
 GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. 
Interpro
 IPR023214; HAD-like_dom.
 IPR006357; HAD-SF_hydro_IIA.
 IPR006355; HAD-SF_hydro_IIA_hyp2.
 IPR023215; NPhePase-like_dom. 
Pfam
 PF13344; Hydrolase_6 
SMART
  
PROSITE
  
PRINTS