CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-000259
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Actin-binding LIM protein 1 
Protein Synonyms/Alias
 abLIM-1; Actin-binding LIM protein family member 1; Actin-binding double zinc finger protein; LIMAB1; Limatin 
Gene Name
 ABLIM1 
Gene Synonyms/Alias
 ABLIM; KIAA0059; LIMAB1 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
384DNEILDYKDLAAIPKubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
 May act as scaffold protein (By similarity). May play a role in the development of the retina. Has been suggested to play a role in axon guidance. 
Sequence Annotation
 DOMAIN 97 156 LIM zinc-binding 1.
 DOMAIN 156 216 LIM zinc-binding 2.
 DOMAIN 224 283 LIM zinc-binding 3.
 DOMAIN 283 343 LIM zinc-binding 4.
 DOMAIN 710 778 HP.
 MOD_RES 216 216 Phosphoserine (By similarity).
 MOD_RES 353 353 Phosphoserine (By similarity).
 MOD_RES 367 367 Phosphoserine.
 MOD_RES 373 373 Phosphotyrosine.
 MOD_RES 396 396 Phosphotyrosine.
 MOD_RES 426 426 Phosphoserine.
 MOD_RES 431 431 Phosphoserine.
 MOD_RES 433 433 Phosphothreonine.
 MOD_RES 435 435 Phosphoserine.
 MOD_RES 439 439 Phosphotyrosine.
 MOD_RES 450 450 Phosphoserine (By similarity).
 MOD_RES 452 452 Phosphoserine (By similarity).
 MOD_RES 455 455 Phosphoserine.
 MOD_RES 458 458 Phosphoserine.
 MOD_RES 587 587 Phosphoserine.
 MOD_RES 640 640 Phosphoserine.
 MOD_RES 655 655 Phosphoserine.  
Keyword
 Actin-binding; Alternative splicing; Coiled coil; Complete proteome; Cytoplasm; Cytoskeleton; LIM domain; Metal-binding; Phosphoprotein; Polymorphism; Reference proteome; Repeat; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 778 AA 
Protein Sequence
MPAFLGLKCL GKLCSSEKSK VTSSERTSAR GSNRKRLIVE DRRVSGTSFT AHRRATITHL 60
LYLCPKDYCP RGRVCNSVDP FVAHPQDPHH PSEKPVIHCH KCGEPCKGEV LRVQTKHFHI 120
KCFTCKVCGC DLAQGGFFIK NGEYLCTLDY QRMYGTRCHG CGEFVEGEVV TALGKTYHPN 180
CFACTICKRP FPPGDRVTFN GRDCLCQLCA QPMSSSPKET TFSSNCAGCG RDIKNGQALL 240
ALDKQWHLGC FKCKSCGKVL TGEYISKDGA PYCEKDYQGL FGVKCEACHQ FITGKVLEAG 300
DKHYHPSCAR CSRCNQMFTE GEEMYLQGST VWHPDCKQST KTEEKLRPTR TSSESIYSRP 360
GSSIPGSPGH TIYAKVDNEI LDYKDLAAIP KVKAIYDIER PDLITYEPFY TSGYDDKQER 420
QSLGESPRTL SPTPSAEGYQ DVRDRMIHRS TSQGSINSPV YSRHSYTPTT SRSPQHFHRP 480
GNEPSSGRNS PLPYRPDSRP LTPTYAQAPK HFHVPDQGIN IYRKPPIYKQ HAALAAQSKS 540
SEDIIKFSKF PAAQAPDPSE TPKIETDHWP GPPSFAVVGP DMKRRSSGRE EDDEELLRRR 600
QLQEEQLMKL NSGLGQLILK EEMEKESRER SSLLASRYDS PINSASHIPS SKTASLPGYG 660
RNGLHRPVST DFAQYNSYGD VSGGVRDYQT LPDGHMPAMR MDRGVSMPNM LEPKIFPYEM 720
LMVTNRGRNK ILREVDRTRL ERHLAPEVFR EIFGMSIQEF DRLPLWRRND MKKKAKLF 778 
Gene Ontology
 GO:0015629; C:actin cytoskeleton; TAS:ProtInc.
 GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
 GO:0003779; F:actin binding; TAS:ProtInc.
 GO:0008270; F:zinc ion binding; IEA:InterPro.
 GO:0007411; P:axon guidance; TAS:Reactome.
 GO:0007010; P:cytoskeleton organization; IEA:InterPro.
 GO:0009887; P:organ morphogenesis; TAS:ProtInc.
 GO:0007601; P:visual perception; TAS:ProtInc. 
Interpro
 IPR003128; Villin_headpiece.
 IPR001781; Znf_LIM. 
Pfam
 PF00412; LIM
 PF02209; VHP 
SMART
 SM00132; LIM
 SM00153; VHP 
PROSITE
 PS51089; HP
 PS00478; LIM_DOMAIN_1
 PS50023; LIM_DOMAIN_2 
PRINTS