CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-007181
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Reduced viability upon starvation protein 167 
Protein Synonyms/Alias
  
Gene Name
 RVS167 
Gene Synonyms/Alias
 YDR388W; D9509.8 
Created Date
 July 27, 2013 
Organism
 Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) 
NCBI Taxa ID
 559292 
Lysine Modification
Position
Peptide
Type
References
22QSFRQKFKMGEQTEDubiquitination[1]
242YNRLQDMKIPYFDLNubiquitination[1, 2]
481GNYVQLNKN******ubiquitination[1, 2, 3, 4, 5]
Reference
 [1] Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation.
 Swaney DL, Beltrao P, Starita L, Guo A, Rush J, Fields S, Krogan NJ, VillĂ©n J.
 Nat Methods. 2013 Jul;10(7):676-82. [PMID: 23749301]
 [2] Sites of ubiquitin attachment in Saccharomyces cerevisiae.
 Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.
 Proteomics. 2012 Jan;12(2):236-40. [PMID: 22106047]
 [3] A proteomics approach to understanding protein ubiquitination.
 Peng J, Schwartz D, Elias JE, Thoreen CC, Cheng D, Marsischky G, Roelofs J, Finley D, Gygi SP.
 Nat Biotechnol. 2003 Aug;21(8):921-6. [PMID: 12872131]
 [4] Computational identification of ubiquitylation sites from protein sequences.
 Tung CW, Ho SY.
 BMC Bioinformatics. 2008 Jul 15;9:310. [PMID: 18625080]
 [5] Identification, analysis, and prediction of protein ubiquitination sites.
 Radivojac P, Vacic V, Haynes C, Cocklin RR, Mohan A, Heyen JW, Goebl MG, Iakoucheva LM.
 Proteins. 2010 Feb 1;78(2):365-80. [PMID: 19722269
Functional Description
 Component of a cytoskeletal structure that is required for the formation of endocytic vesicles at the plasma membrane level. Could be implicated in cytoskeletal reorganization in response to environmental stresses and could act in the budding site selection mechanism. 
Sequence Annotation
 DOMAIN 17 254 BAR.
 DOMAIN 421 482 SH3.
 MOD_RES 299 299 Phosphoserine; by FUS3 and PHO85.
 MOD_RES 321 321 Phosphoserine; by FUS3 and PHO85.
 MOD_RES 379 379 Phosphoserine; by FUS3 and PHO85.
 CROSSLNK 481 481 Glycyl lysine isopeptide (Lys-Gly)  
Keyword
 Actin-binding; Coiled coil; Complete proteome; Cytoplasm; Cytoskeleton; Isopeptide bond; Phosphoprotein; Reference proteome; SH3 domain; Ubl conjugation. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 482 AA 
Protein Sequence
MSFKGFTKAV SRAPQSFRQK FKMGEQTEDP VYEDAERRFQ ELEQETKKLS EESKRYSTAV 60
NGMLTHQIGF AKSMEEIFKP ISGKMSDPNA TIPEDNPQGI EASEQYRAIV AELQETLKPD 120
LALVEEKIVT PCQELLKIIT YIRKMATKRN HKKLDLDRHL NTYNKHEKKK EPTAKDEERL 180
YKAQAQVEVA QQEYDYYNDL LKTQLPILFS LEAEFVKPLF VSFYFMQLNI FYTLYNRLQD 240
MKIPYFDLNS DIVESYIAKK GNVEEQTDAL TITHFKLGYS KAKLEMTRRK YGVATAEGSP 300
VSGASSGVGY GAGYDPATAT SPTPTGYGYG AAAPSYAAQP AAQYGTAAAV GTAAAVGTAA 360
GAAAGAVPGT YPQYAAAQSP PLTGLGFQQS PQQQQGPPPA YSNPLTSPVA GTPAAAVAAA 420
PGVETVTALY DYQAQAAGDL SFPAGAVIEI VQRTPDVNEW WTGRYNGQQG VFPGNYVQLN 480
KN 482 
Gene Ontology
 GO:0030479; C:actin cortical patch; IDA:SGD.
 GO:0043332; C:mating projection tip; IDA:SGD.
 GO:0008092; F:cytoskeletal protein binding; ISS:SGD.
 GO:0051666; P:actin cortical patch localization; IMP:SGD.
 GO:0006897; P:endocytosis; IMP:SGD.
 GO:0060988; P:lipid tube assembly; IDA:SGD. 
Interpro
 IPR027267; AH/BAR-dom.
 IPR004148; BAR_dom.
 IPR001452; SH3_domain. 
Pfam
 PF03114; BAR
 PF00018; SH3_1 
SMART
 SM00721; BAR
 SM00326; SH3 
PROSITE
 PS51021; BAR
 PS50002; SH3 
PRINTS
 PR00452; SH3DOMAIN.