CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-020689
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Glycine--tRNA ligase 
Protein Synonyms/Alias
 Diadenosine tetraphosphate synthetase; AP-4-A synthetase; Glycyl-tRNA synthetase; GlyRS 
Gene Name
 Gars 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
89DRAVAELKARKRVLEacetylation[1]
89DRAVAELKARKRVLEsuccinylation[1]
89DRAVAELKARKRVLEubiquitination[2]
98RKRVLEAKELALQPKacetylation[1, 3, 4]
98RKRVLEAKELALQPKsuccinylation[1]
98RKRVLEAKELALQPKubiquitination[2]
187KTSGHVDKFADFMVKacetylation[3]
187KTSGHVDKFADFMVKubiquitination[2]
194KFADFMVKDVKNGECacetylation[3, 4]
209FRADHLLKAHLQKLMacetylation[3]
214LLKAHLQKLMSDKKCacetylation[3]
308LLEFNQGKLPFAAAQubiquitination[2]
350HFVDPTEKDHPKFQSacetylation[1]
409RIYLYLTKVGISPDKubiquitination[2]
474KVPLVAEKPLKEPKTacetylation[1]
491VVQFEPNKGAVGKAYacetylation[4]
543GKTFQLTKDMVSVKRacetylation[3]
723FEGQETGKKETVEE*ubiquitination[2]
724EGQETGKKETVEE**ubiquitination[2]
Reference
 [1] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [2] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023]
 [3] Quantitative acetylome analysis reveals the roles of SIRT1 in regulating diverse substrates and cellular pathways.
 Chen Y, Zhao W, Yang JS, Cheng Z, Luo H, Lu Z, Tan M, Gu W, Zhao Y.
 Mol Cell Proteomics. 2012 Oct;11(10):1048-62. [PMID: 22826441]
 [4] Proteomic investigations of lysine acetylation identify diverse substrates of mitochondrial deacetylase sirt3.
 Sol EM, Wagner SA, Weinert BT, Kumar A, Kim HS, Deng CX, Choudhary C.
 PLoS One. 2012;7(12):e50545. [PMID: 23236377
Functional Description
 Catalyzes the attachment of glycine to tRNA(Gly). Is also able produce diadenosine tetraphosphate (Ap4A), a universal pleiotropic signaling molecule needed for cell regulation pathways, by direct condensation of 2 ATPs (By similarity). 
Sequence Annotation
 DOMAIN 53 109 WHEP-TRS.
 NP_BIND 321 323 ATP (By similarity).
 NP_BIND 331 336 ATP (By similarity).
 NP_BIND 447 448 ATP (By similarity).
 NP_BIND 570 573 ATP (By similarity).
 REGION 336 340 Substrate binding (By similarity).
 REGION 566 570 Substrate binding (By similarity).
 BINDING 203 203 Substrate (By similarity).
 BINDING 289 289 Substrate (By similarity).
 BINDING 425 425 Substrate (By similarity).
 BINDING 425 425 Substrate; via carbonyl oxygen (By
 MOD_RES 194 194 N6-acetyllysine (By similarity).
 MOD_RES 443 443 Phosphotyrosine.
 MOD_RES 491 491 N6-acetyllysine (By similarity).  
Keyword
 Acetylation; Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Ligase; Mitochondrion; Nucleotide-binding; Phosphoprotein; Protein biosynthesis; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 729 AA 
Protein Sequence
MPCLLPSLLR ATRAALPLLS PPRVVAASAS QRLLSAPAQP AASRSSMDSA EELLAPLRLA 60
VRQQGDFVRK LKEDKAPQVD VDRAVAELKA RKRVLEAKEL ALQPKDDIVD RAKMEDTLKR 120
RFFYDQAFAI YGGVSGLYDF GPVGCALKNN IIQAWRQHFI QEEQILEIDC TMLTPEPVLK 180
TSGHVDKFAD FMVKDVKNGE CFRADHLLKA HLQKLMSDKK CSAEKKSEME SVLAQLDNYG 240
QQELADLFVN YNVKSPTTGN DLSPPVPFNL MFQTFIGPGG NMPGYLRPET AQGIFLNFKR 300
LLEFNQGKLP FAAAQIGNSF RNEISPRSGL IRVREFTMAE IEHFVDPTEK DHPKFQSVAD 360
LCLYLYSAKA QVTGQSARKM RLGDAVEQGV INNSVLGYFI GRIYLYLTKV GISPDKLRFR 420
QHMENEMAHY ACDCWDAESK TSYGWIEIVG CADRSCYDLS CHARATKVPL VAEKPLKEPK 480
TVNVVQFEPN KGAVGKAYKK DAKLVLEYLS ACDECYISEM ELLLSEKGEF TIETEGKTFQ 540
LTKDMVSVKR FQKTLHVEEV VPSVIEPSFG LGRIMYTILE HTFHVREGDE QRTFFSFPAV 600
VAPFKCSVLP LSQNQEFMPF VKELSEALTR NGVSHKVDDS SGSIGRRYAR TDEIGVAFGI 660
TIDFDTVNKT PHTATLRDRD SMRQIRAEVS ELPNVVRDLA NGNITWADVE ARYPLFEGQE 720
TGKKETVEE 729 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0030141; C:secretory granule; IDA:MGI.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004820; F:glycine-tRNA ligase activity; ISS:UniProtKB.
 GO:0046983; F:protein dimerization activity; ISS:UniProtKB.
 GO:0015966; P:diadenosine tetraphosphate biosynthetic process; ISS:UniProtKB.
 GO:0006426; P:glycyl-tRNA aminoacylation; IEA:InterPro. 
Interpro
 IPR002314; aa-tRNA-synt_IIb_cons-dom.
 IPR006195; aa-tRNA-synth_II.
 IPR004154; Anticodon-bd.
 IPR027031; Gly-tRNA_synthase/POLG2.
 IPR009068; S15_NS1_RNA-bd.
 IPR002315; tRNA-synt_gly.
 IPR000738; WHEP-TRS. 
Pfam
 PF03129; HGTP_anticodon
 PF00587; tRNA-synt_2b
 PF00458; WHEP-TRS 
SMART
 SM00991; WHEP-TRS 
PROSITE
 PS50862; AA_TRNA_LIGASE_II
 PS00762; WHEP_TRS_1
 PS51185; WHEP_TRS_2 
PRINTS
 PR01043; TRNASYNTHGLY.