CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-016659
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 YTH domain family protein 3 
Protein Synonyms/Alias
  
Gene Name
 Ythdf3 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
408EVHPVLEKLKAINNYubiquitination[1]
425KDFDWNLKNGRVFIIubiquitination[1]
538RLENNDNKPVTNSRDubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
 DOMAIN 416 550 YTH.
 MOD_RES 2 2 N-acetylserine (By similarity).
 MOD_RES 23 23 Phosphoserine (By similarity).  
Keyword
 Acetylation; Alternative splicing; Complete proteome; Direct protein sequencing; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 585 AA 
Protein Sequence
MSATSVDQRP KGQGNKVSVQ NGSIHQKDAV NDDDFEPYLS SQTNQKYRRA KQLFHCNNSY 60
PPMSDPYMPS YYAPSIGFPY SLGEAAWSTA GDQPMPYLTT YGQMSNGEHH YIPDGVFSQP 120
GALGNTPPFL GQHGFNFFPG NADFSTWGTS GSQGQSTQNS AYSSSYGYPP SSLGRAITDG 180
QAGFGNDTLS KVPGISSIEQ GMTGLKIGGD LTAAVTKTVG TALSSSGMTS IATNNVPPVS 240
SAAPKPTSWA AIARKPAKPQ PKLKPKGNVG IGGSAVPPPP IKHNMNIGTW DEKGSVVKAP 300
PTQPVLPPQT IIQQPQPLIQ PPPLVQSQLP QQQPQPPQPQ QQQGPQPQAQ PHQVQSQQPQ 360
LQNRWVAPRN RGTGFNQNNG TGSENFGLGV VPVSASPSSV EVHPVLEKLK AINNYNPKDF 420
DWNLKNGRVF IIKSYSEDDI HRSIKYSIWC STEHGNKRLD AAYRSLNGKG PLYLLFSVNG 480
SGHFCGVAEM KSVVDYNAYA GVWSQDKWKG KFEVKWIFVK DVPNNQLRHI RLENNDNKPV 540
TNSRDTQEVP LEKAKQVLKI IATFKHTTSI FDDFAHYEKR QEEEEAMRRE RNRNKQ 596 
Gene Ontology
  
Interpro
 IPR007275; YTH_domain. 
Pfam
 PF04146; YTH 
SMART
  
PROSITE
 PS50882; YTH 
PRINTS