CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-034616
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Chromodomain helicase DNA binding protein 6 (Predicted) 
Protein Synonyms/Alias
 Protein Chd6 
Gene Name
 Chd6 
Gene Synonyms/Alias
 Chd6_predicted; rCG_32098 
Created Date
 July 27, 2013 
Organism
 Rattus norvegicus (Rat) 
NCBI Taxa ID
 10116 
Lysine Modification
Position
Peptide
Type
References
1976IIPTEPFKLKHELLKacetylation[1]
Reference
 [1] Proteomic analysis of lysine acetylation sites in rat tissues reveals organ specificity and subcellular patterns.
 Lundby A, Lage K, Weinert BT, Bekker-Jensen DB, Secher A, Skovgaard T, Kelstrup CD, Dmytriyev A, Choudhary C, Lundby C, Olsen JV.
 Cell Rep. 2012 Aug 30;2(2):419-31. [PMID: 22902405
Functional Description
  
Sequence Annotation
  
Keyword
 ATP-binding; Complete proteome; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 2698 AA 
Protein Sequence
MKMKIQKKEK QLSKLRALNH SPMSDASVNF DYKSPSPFDC SPDQGENIEE AANHCLPQKD 60
FYTTEEEADT LFSRKLMSHN GMEDNGGRGT GVKKKRKKKE PGEQEGTKAS KDREPKPKRK 120
REPKEPKEPR RAKEPKRAKE PKEAKQKDGV KKPRKPREAS GTKEGKEKRS CTDCGPRTKP 180
KKASKDQGPT PVERKKKGKR KNETTVESLE LDQSLPNPSL QSPEEPSESA DSQKRRSGRQ 240
VKRRKYNEDL DFKVVDDDGE TIAVLGAGRT SALSASTLAW QAEEPPEDDA NIIEKILASK 300
TVQEVHPGEP PFDLELFYVK YRNFSYLHCK WATMEELEKD PRIAQKIKRF RNKQAQMKHI 360
FTEPDEDLFN PDYIEIDRIL EVAHTKDAET GEEVTHYLVK WCSLPYEEST WELEEDVDPA 420
KVKEFESLQI LPEVKPVERP ASDAWQKLET SREYKNSNRL REYQLEGMNW LLFNWYNRKN 480
CILADEMGLG KTIQSIAFLS EIFVRGIHGP FLIIAPLSTI TNWEREFRTW TEMNAIVYHG 540
SQISRQMIQQ YEMVYRDAQG NPLSGVFKFH VVITTFEMIL ADCPELKKIH WSCVVIDEAH 600
RLKNRNCKLL EGLKLMALEH KVLLTGTPLQ NSVEELFSLL NFLEPSQFPS ETAFLEEFGD 660
LKTEEQVKKL QSILKPMMLR RLKDDVEKNL APKQETIIEV ELTNIQKKYY RAILEKNFSF 720
LTKGANQHNM PNLINTMMEL RKCCNHPYLI NGAEEKILED FRKAHSSEAS DFQLQAMIQA 780
AGKLVLIDKL LPKLIAGGHK VLIFSQMVRC LDILEDYLIQ RRYTYERIDG RVRGNLRQAA 840
IDRFCKPDSD RFVFLLCTRA GGLGINLTAA DTCIIFDSDW NPQNDLQAQA RCHRIGQSKA 900
VKVYRLITRN SYEREMFDKA SLKLGLDKAI LQDINRKGST NGVQQLSKME VEDLLRKGAY 960
GALMDEEDEG SKFCEEDIDQ ILQRRTHTIT IQSEGKGSTF AKASFVASGN RTDISLDDPN 1020
FWQKWAKIAE LDTEANNEKE SLVIDRPRVR KQTKHYNSFE EDELMEFSEL DSDSDERPTR 1080
SRRLSDKARR YLRAECFRVE KNLLTFGWGR WKDILTHGRF KWPLNEKDME VICRALLVYC 1140
VKHYKGDEKI KSFIWELITP SKDGQVQTLQ NHSGLSAPVP RGRKGKKTKN QLLLPELKTA 1200
DWLATCNPEV VLHDDGYKKH LKQHCNKVLL RVRMLYYLKA EILGEAADKA FEGTPARELD 1260
VLLPDIDYVE IPVDWWDAEA DKSLLIGVFK HGYERYNAMR ADPALCFLEK VGMPDEKSLS 1320
AEQGVTDGTS DIPERGNIDK EDSAEDKVDG LQKQTASPSD GSDGIFGEKK DDSQAVSSAL 1380
TARLRRLVTI YQRCNRKELC RPEILGPGNQ GYWVQEEVFR RTSDMDLINK EAQKRWTRRE 1440
QADFYRTVSS FGVVYDQEKE AFDWTQFRAI SRLDKKSDEN LEHYFHSFVA MCRNVCRLPT 1500
WKDDGPPDAS IYVEPITEER AAKTLYRIEL LRKVREQVLT CPQLHERLQL CRPSLYLPVW 1560
WECGKHDRDL LIGTAKHGLN RTDYYIMNDP QLSFLDAYRN YAQHKRTDTQ APGSLCCLYQ 1620
GNSKLYESLT YTPMSRTSES LESEPENLVK MDSRDDHLCL PEAGLPDITC ENFVSKVQEV 1680
ISLDHDESLL PESLENMMYG KTGLSQEPRS FQEAPSTNMQ SRKKTVTVSA SRDESCQLPG 1740
IEAEITSASS LMSSLEAGVA KMNIKNGKHL LVSISEEGEP CCSETGRSPE SRGRLEARCL 1800
ASPTLDTGHE SGFVDLCSLS VYDSKRNFSS DQQLIDLLEN KSLENKLILN QSDEEEEENE 1860
KETLAIVAST TEKPAVLDFT QPTASIPRGK NLSFHQDEAK KGRLEVGSKT PGPQRAFPPS 1920
ANQCHCKHIE RWAHGLGSEE SEGEKPKAYE PDPYRSKANN TTVEGEPAII PTEPFKLKHE 1980
LLKEPWKESS EGGKSFSMYV PEGSEPKSEE MDFENKDDYE KDGACHSQDY PGKYSEEESK 2040
SSASGIAGDL GEEAQEVRAP TIAQLLQEKT LYSFSEWPKD RVIINRLDNI CHVVLKGKWP 2100
CSHQYEPSGA LPTPVLSSSA GSRSSLSEPE ATEHSFSNGA ALAAQIQKES FLAPVFTKDE 2160
QKHRRPYEFE VERDAKARSL EEYSASHGRP PIVLNGWHGE SAIDLSCSSE GSPGATSPFP 2220
VSASTPKIGA ISSLQGALGM DLSGILQAGL IHPVTGQIVN GSLRRDDAAM RRRRGRRKHI 2280
EGGMDLIFLK EQTLQAGILE VHEDAGQTTL NTTHPEGPGA ASSASEPTAA ASSQAEKAVP 2340
SKSLLDWLRQ QADYSLDVPG FGASFSDKPK QRRPRCKEPG KLDIGSLGGE ERVSAVPKEP 2400
GLRGFLPESK FNHTLAEPVL RDAGPRRRGR RPRNELLKAP AIVADSPSGM GPLFMNGLIA 2460
GMDLVGLQNV RNIPGIPLTG LVGFPAGFAT MPTGEDVKNT LSMLPMMLPG MATVPQMFGV 2520
GGLLNTPMAT TCTTTASASL ASTKSGASAT EKTTEDELSG RDVKADSLVE DKPGPSPFSD 2580
QSEPTITTSS PVAFNPFLIP GVSPGLIYPS MFLSPGMGMA LPAMQQGRHS EMAGLETQKR 2640
KKKKTKGDNP TPEPASVCER EPGSDQNCTE SSVTVSPERE HVAQAREEGL KDSNDDTN 2698 
Gene Ontology
 GO:0005634; C:nucleus; IEA:UniProtKB-KW.
 GO:0005524; F:ATP binding; IEA:InterPro.
 GO:0008026; F:ATP-dependent helicase activity; IEA:InterPro.
 GO:0003677; F:DNA binding; IEA:InterPro. 
Interpro
 IPR006576; BRK_domain.
 IPR023780; Chromo_domain.
 IPR000953; Chromo_domain/shadow.
 IPR016197; Chromodomain-like.
 IPR002464; DNA/RNA_helicase_DEAH_CS.
 IPR014001; Helicase_ATP-bd.
 IPR001650; Helicase_C.
 IPR027417; P-loop_NTPase.
 IPR000330; SNF2_N. 
Pfam
 PF07533; BRK
 PF00385; Chromo
 PF00271; Helicase_C
 PF00176; SNF2_N 
SMART
 SM00298; CHROMO
 SM00487; DEXDc
 SM00490; HELICc 
PROSITE
 PS50013; CHROMO_2
 PS00690; DEAH_ATP_HELICASE
 PS51192; HELICASE_ATP_BIND_1
 PS51194; HELICASE_CTER 
PRINTS