CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-002106
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Thymidine kinase, cytosolic 
Protein Synonyms/Alias
  
Gene Name
 TK1 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
131LDGTFQRKPFGAILNubiquitination[1]
170TKRLGTEKEVEVIGGubiquitination[1]
220GEAVAARKLFAPQQIubiquitination[2, 3]
Reference
 [1] Systematic and quantitative assessment of the ubiquitin-modified proteome.
 Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP.
 Mol Cell. 2011 Oct 21;44(2):325-40. [PMID: 21906983]
 [2] A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles.
 Wagner SA, Beli P, Weinert BT, Nielsen ML, Cox J, Mann M, Choudhary C.
 Mol Cell Proteomics. 2011 Oct;10(10):M111.013284. [PMID: 21890473]
 [3] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
  
Sequence Annotation
 NP_BIND 26 33 ATP.
 NP_BIND 58 60 ATP.
 NP_BIND 97 100 ATP.
 REGION 172 176 Substrate binding.
 ACT_SITE 98 98 Proton acceptor (Potential).
 METAL 153 153 Zinc.
 METAL 156 156 Zinc.
 METAL 185 185 Zinc.
 METAL 188 188 Zinc.
 BINDING 128 128 Substrate; via amide nitrogen.
 BINDING 181 181 Substrate.
 MOD_RES 2 2 N-acetylserine.
 MOD_RES 13 13 Phosphoserine.
 MOD_RES 231 231 Phosphoserine.  
Keyword
 3D-structure; Acetylation; ATP-binding; Complete proteome; Cytoplasm; DNA synthesis; Kinase; Metal-binding; Nucleotide-binding; Phosphoprotein; Reference proteome; Transferase; Zinc. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 234 AA 
Protein Sequence
MSCINLPTVL PGSPSKTRGQ IQVILGPMFS GKSTELMRRV RRFQIAQYKC LVIKYAKDTR 60
YSSSFCTHDR NTMEALPACL LRDVAQEALG VAVIGIDEGQ FFPDIVEFCE AMANAGKTVI 120
VAALDGTFQR KPFGAILNLV PLAESVVKLT AVCMECFREA AYTKRLGTEK EVEVIGGADK 180
YHSVCRLCYF KKASGQPAGP DNKENCPVPG KPGEAVAARK LFAPQQILQC SPAN 234 
Gene Ontology
 GO:0005829; C:cytosol; TAS:Reactome.
 GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
 GO:0004797; F:thymidine kinase activity; TAS:ProtInc.
 GO:0008270; F:zinc ion binding; IDA:UniProtKB.
 GO:0048565; P:digestive tract development; IEA:Compara.
 GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
 GO:0060138; P:fetal process involved in parturition; IEA:Compara.
 GO:0001889; P:liver development; IEA:Compara.
 GO:0051289; P:protein homotetramerization; IPI:UniProtKB.
 GO:0006206; P:pyrimidine nucleobase metabolic process; TAS:Reactome.
 GO:0043097; P:pyrimidine nucleoside salvage; TAS:Reactome.
 GO:0046688; P:response to copper ion; IEA:Compara.
 GO:0051414; P:response to cortisol stimulus; IEA:Compara.
 GO:0031667; P:response to nutrient levels; IEA:Compara.
 GO:0009636; P:response to toxic substance; IEA:Compara.
 GO:0014856; P:skeletal muscle cell proliferation; IEA:Compara.
 GO:0046104; P:thymidine metabolic process; IEA:Compara. 
Interpro
 IPR027417; P-loop_NTPase.
 IPR001267; Thymidine_kinase.
 IPR020633; Thymidine_kinase_CS. 
Pfam
 PF00265; TK 
SMART
  
PROSITE
 PS00603; TK_CELLULAR_TYPE 
PRINTS