CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-043228
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Vacuolar protein sorting-associated protein 13D 
Protein Synonyms/Alias
  
Gene Name
 VPS13D 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
1811VSPVSVDKVGTFFRYubiquitination[1]
1823FRYAAPDKNSSSSTIubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 3210 AA 
Protein Sequence
XRTVGMANRE KYGRKIATAS IGGTKVNVSM GSTFDMNGSL GCLQLMDLTQ DNVKNQYVVS 60
IGNSVGYENI ISDIGYFESV FVRMEDAALT EALSFTFVER SKQECFLNLK MASLHYNHSA 120
KFLKELTLSM DELEENFRGM LKSAATKVTT VLATKTAEYS EMVSLFETPR KTREPFILEE 180
NEIYGFDLAS SHLDTVKLIL NINIESPVVS IPRKPGSPEL LVGHLGQIFI QNFVAGDDES 240
RSDRLQVEIK DIKLYSLNCT QLAGREAVGS EGSRMFCPPS GSGSANSQEE AHFTRHDFFE 300
SLHRGQAFHI LNNTTIQFKL EKIPIERESE LTFSLSPDDL GTSSIMKIEG KFVNPVQVVL 360
AKHVYEQVLQ TLDNLVYSED LNKYPASATS SPCPDSPLPP LSTCGESSVE RKENGLFSHS 420
SLSNTSQKSL SVKEVKSFTQ IQATFCISEL QVQLSGDLTL GAQGLVSLKF QDFEVEFSKD 480
HPQTLSIQIA LHSLLMEDLL EKNPDSKYKN LMVSRGAPKP SSLAQKEYLS QSCPSVSNVE 540
YPDMPRSLPS HMEEAPNVFQ LYQRPTSASR KKQKEVQDKD YPLTPPPSPT VDEPKILVGK 600
SKFDDSLVHI NIFLVDKKHP EFSSSYNRVN RSIDVDFNCL DVLITLQTWV VILDFFGIGS 660
TADNHAMRLP PEGILHNVKL EPHASMESGL QDPVNTKLDL KVHSLSLVLN KTTSELAKAN 720
VSKLVAHLEM IEGDLALQGS IGSLSLSDLT CHGEFYRERF TTSGEEALIF QTFKYGRPDP 780
LLRREHDIRV SLRMASVQYV HTQRFQAEVV AFIQHFTQLQ DVLGRQRAAI EGQTVRDQAQ 840
RCSRVLLDIE AGAPVLLIPE SSRSNNLIVA NLGKLKVKNK FLFAGFPGTF SLQDKESVPS 900
ASPTGIPKHS LRKTTSTEEP RGTHSQGQFT MPLAGMSLGS LKSEFVPSTS TKQQGPQPTL 960
SVGQESSSPE DHVCLLDCVV VDLQDMDIFA AERHPREYSK APEDSSGDLI FPSYFVRQTG 1020
GSLLTEPCRL KLQVERNLDK EISHTVPDIS IHGNLSSVHC SLDLYKYKLI RGLLENNLGE 1080
PIEEFMRPYD LQDPRIHTVL SGEVYTCMCF LIDMVNVSLE LKDPKRKEGA GSLARFDFKK 1140
CKLLYESFSN QTKSINLVSH SMMAFDTRYA GQKTSPGMTN VFSCIFQPAK NSSTTQGSIQ 1200
IELHFRSTKD SSCFTVVLNN LRVFLIFDWL LLVHDFLHTP SDIKKQNHVT PSRHRNSSSE 1260
SAIVPKTVKS GVVTKRSSLP VSNERHLEVK VNVTGTEFVV IEDVSCFDTN AIILKGTTVL 1320
TYKPRFVDRP FSGSLFGIEV FSCRLGNEHD TALSIVDPVQ IQMELVGNSS YQNSSGLMDA 1380
FNSEDFPPVL EIQLQALDIR LSYNDVQLFL AIAKSIPEQA NAAVPDSVAL ESDSVGTYLP 1440
GASRVGEEIR EGTRHTLDPV LELQLARLQE LGFSMDDCRK ALLACQGQLK KAASWLFKNA 1500
EPLKSLSLAS TSRDSPGAVA APLISGVEIK AESVCICFID DCMDCDVPLA ELTFSRLNFL 1560
QRVRTSPEGY AHFTLSGDYY NRALSGWEPF IEPWPCSVSW QQQAASRLHP PRLKLEAKAK 1620
PRLDINITSV LIDQYVSTKE SWMADYCKDD KDIESAKSED WMGSSVDPPC FGQSLPLVYL 1680
RTRSTASLTN LEHQIYAREV KTPKRRQPFV PFALRNHTGC TLWFATLTTT PTRAALSHSG 1740
SPGVVPEGNG TFLDDTHNVS EWREVLTGEE IPFEFEARGK LRHRHTHDLR IHQLQVRVNG 1800
WEQVSPVSVD KVGTFFRYAA PDKNSSSSTI GSPSSRTNII HPQVYFSSLP PVRVVFAVTM 1860
EGSARKVITV RSALIVRNRL ETPMELRLDS PSAPDKPVVL PAIMPGDSFA VPLHLTSWRL 1920
QARPKGLGVF FCKAPIHWTN VVKTAEISSS KRECHSMDTE KSRFFRFCVA IKKENYPDYM 1980
PSNIFSDSAK QIFRQPGHTI YLLPTVVICN LLPCELDFYV KGMPINGTLK PGKEAALHTA 2040
DTSQNIELGV SLENFPLCKE LLIPPGTQNY MVRMRLYDVN RRQLNLTIRI VCRAEGSLKI 2100
FISAPYWLIN KTGLPLIFRQ DNAKTDAAGQ FEEHELARSL SPLLFCYADK EQPNLCTMRI 2160
GRGIHPEGMP GWCQGFSLDG GSGVRALKVI QQGNRPGLIY NIGIDVKKGR GRYIDTCMVI 2220
FAPRYLLDNK SSHKLAFAQR EFARGQGTAN PEGYISTLPG SSVVFHWPRN DYDQLLCVRL 2280
MDVPNCIWSG GFEVNKNNSF HINMRDTLGK CFFLRVEITL RGATYRISFS DTDQLPPPFR 2340
IDNFSKVPVV FTQHGVAEPR LRTEVKPMTS LDYAWDEPTL PPFITLTVKG AGSSEINCNM 2400
NDFQDNRQLY YENFIYIAAT YTFSGLQEGT GRPVASNKAI TCAELVLDVS PKTQRVILKK 2460
KEPGKRSQLW RMTGTGMLAH EGSSVPHNPN KPSAARSTEG SAILDIAGLA AVTDNRYEPL 2520
MLRKPDRRRS TTQTWSFREG KLTCGLHGLV VQAKGGLSGL FDGAEVVLGP DTSMELLGPV 2580
PPEQQFINQK MRPGSGMLSI RVIPDGPTRA LQITDFCHRK SSRSYEVDEL PVTEQELQKL 2640
KNPDTEQELE VLVRLEGGIG LSLINKVPEE LVFASLTGIN VHYTQLATSH MLELSIQDVQ 2700
VDNQLIGTTQ PFMLYVTPLS NENEVIETGP AVQVNAVKFP SKSALTNIYK HLMITAQRFT 2760
VQIEEKLLLK LLSFFGYDQA ESEVEKYDEN LHEKTAEQGG TPIRYYFENL KISIPQIKLS 2820
VFTSNKLPLD LKALKSTLGF PLIRFEDAVI NLDPFTRVHP YETKEFIIND ILKHFQEELL 2880
SQAARILGSV DFLGNPMGLL NDVSEGVTGL IKYGNVGGLI RNVTHGVSNS AAKFAGTLSD 2940
GLGKTMDNRH QSEREYIRYH AATSGEHLVA GIHGLAHGII GGLTSVITST VEGVKTEGGV 3000
SGFISGLGKG LVGTVTKPVA GALDFASETA QAVRDTATLS GPRTQAQRVR KPRCCTGPQG 3060
LLPRYSESQA EGQEQLFKLT DNIQDEFFIA VENIDSYCVL ISSKAVYFLK SGDYVDREAI 3120
FLEVKYDDLY HCLVSKDHGK VYVQVTKKAV STSSGVSIPG PSHQKPMVHV KSEVLAVKLS 3180
QEINYAKSLY YEQQLMLRLS ENREQLELDS 3210 
Gene Ontology
  
Interpro
 IPR009060; UBA-like.
 IPR000449; UBA/transl_elong_EF1B_N.
 IPR015940; UBA/transl_elong_EF1B_N_euk.
 IPR026847; VPS13.
 IPR009543; VPSAP_dom. 
Pfam
 PF06650; DUF1162
 PF00627; UBA 
SMART
 SM00165; UBA 
PROSITE
 PS50030; UBA 
PRINTS