CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-020966
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Dimethylglycine dehydrogenase, mitochondrial 
Protein Synonyms/Alias
 ME2GLYDH 
Gene Name
 Dmgdh 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
40PASPPEWKDRAETVIacetylation[1, 2, 3, 4]
40PASPPEWKDRAETVIsuccinylation[3]
107KIHYDSIKLYERLEEacetylation[1, 2, 4, 5, 6, 7]
141PVRVDEFKYQMTRTNacetylation[1, 2, 3, 4, 7]
141PVRVDEFKYQMTRTNsuccinylation[3]
161QYIIEPEKIHELFPLacetylation[2, 4, 7]
173FPLLNMNKILAGLYNacetylation[4]
201ALAAGARKYGALLKYacetylation[7]
201ALAAGARKYGALLKYubiquitination[8]
207RKYGALLKYPAPVTSacetylation[2, 3]
207RKYGALLKYPAPVTSsuccinylation[3]
216PAPVTSLKPRPDGTWacetylation[2, 3, 4, 7]
216PAPVTSLKPRPDGTWsuccinylation[3]
250FWAREVGKMIGLDHPacetylation[2, 3, 7]
250FWAREVGKMIGLDHPsuccinylation[3]
275TSTIPEVKALKRELPacetylation[4, 7]
310GPYESQEKMKLQASWacetylation[1, 2, 3, 4, 7]
310GPYESQEKMKLQASWsuccinylation[3]
310GPYESQEKMKLQASWubiquitination[8]
312YESQEKMKLQASWVTacetylation[3, 7]
312YESQEKMKLQASWVTsuccinylation[3]
328GVPPGFGKELFESDLacetylation[3, 4, 7]
328GVPPGFGKELFESDLsuccinylation[3]
353MEMIPVLKKADIINVacetylation[4, 7]
427LDPNRYGKWTTTQYTacetylation[1, 2, 3, 4, 7]
427LDPNRYGKWTTTQYTsuccinylation[3]
427LDPNRYGKWTTTQYTubiquitination[8]
437TTQYTEAKARESYGFubiquitination[8]
469QRVSGLYKTLKSKCSacetylation[2, 3, 4, 7]
469QRVSGLYKTLKSKCSsuccinylation[3]
469QRVSGLYKTLKSKCSubiquitination[8]
472SGLYKTLKSKCSMGFacetylation[2]
491EQPHWFYKPGQDTQYacetylation[4]
516EPVGSEYKQVMQRVGacetylation[1, 2, 3, 4, 6, 7]
516EPVGSEYKQVMQRVGsuccinylation[3]
532IDLSPFGKFNIKGRDubiquitination[8]
636YARRVLQKLTSEDLSubiquitination[8]
648DLSDDAFKFLQTKSFacetylation[1, 2, 3, 4, 7]
648DLSDDAFKFLQTKSFsuccinylation[3]
653AFKFLQTKSFNISDIacetylation[2, 4, 7]
653AFKFLQTKSFNISDIubiquitination[8]
743EYFVKLNKPADFIGKubiquitination[8]
750KPADFIGKQALKQIKacetylation[2]
754FIGKQALKQIKTEGLacetylation[2, 4, 7]
757KQALKQIKTEGLKRRacetylation[2, 4, 7]
762QIKTEGLKRRLVCLTacetylation[2]
786GNESIWYKGKVVGNTacetylation[1, 3, 4, 5, 6, 7]
786GNESIWYKGKVVGNTsuccinylation[3]
788ESIWYKGKVVGNTTSacetylation[2, 3]
788ESIWYKGKVVGNTTSsuccinylation[3]
788ESIWYKGKVVGNTTSubiquitination[8]
852PARARLQKDGKKTNLacetylation[2]
861GKKTNLEKGPSRTTKacetylation[2, 7]
Reference
 [1] Quantitative assessment of the impact of the gut microbiota on lysine epsilon-acetylation of host proteins using gnotobiotic mice.
 Simon GM, Cheng J, Gordon JI.
 Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11133-8. [PMID: 22733758]
 [2] Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome.
 Hebert AS, Dittenhafer-Reed KE, Yu W, Bailey DJ, Selen ES, Boersma MD, Carson JJ, Tonelli M, Balloon AJ, Higbee AJ, Westphall MS, Pagliarini DJ, Prolla TA, Assadi-Porter F, Roy S, Denu JM, Coon JJ.
 Mol Cell. 2013 Jan 10;49(1):186-99. [PMID: 23201123]
 [3] SIRT5-Mediated Lysine Desuccinylation Impacts Diverse Metabolic Pathways.
 Park J, Chen Y, Tishkoff DX, Peng C, Tan M, Dai L, Xie Z, Zhang Y, Zwaans BM, Skinner ME, Lombard DB, Zhao Y.
 Mol Cell. 2013 Jun 27;50(6):919-30. [PMID: 23806337]
 [4] Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.
 Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ.
 J Biol Chem. 2013 Jul 17;. [PMID: 23864654]
 [5] Mitochondrial acetylome analysis in a mouse model of alcohol-induced liver injury utilizing SIRT3 knockout mice.
 Fritz KS, Galligan JJ, Hirschey MD, Verdin E, Petersen DR.
 J Proteome Res. 2012 Mar 2;11(3):1633-43. [PMID: 22309199]
 [6] Circadian acetylome reveals regulation of mitochondrial metabolic pathways.
 Masri S, Patel VR, Eckel-Mahan KL, Peleg S, Forne I, Ladurner AG, Baldi P, Imhof A, Sassone-Corsi P.
 Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3339-44. [PMID: 23341599]
 [7] Label-free quantitative proteomics of the lysine acetylome in mitochondria identifies substrates of SIRT3 in metabolic pathways.
 Rardin MJ, Newman JC, Held JM, Cusack MP, Sorensen DJ, Li B, Schilling B, Mooney SD, Kahn CR, Verdin E, Gibson BW.
 Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6601-6. [PMID: 23576753]
 [8] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023
Functional Description
  
Sequence Annotation
 MOD_RES 84 84 Tele-8alpha-FAD histidine (By
 MOD_RES 866 866 Phosphothreonine.  
Keyword
 Complete proteome; FAD; Flavoprotein; Mitochondrion; Oxidoreductase; Phosphoprotein; Reference proteome; Transit peptide. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 869 AA 
Protein Sequence
MLRPGALRLR GLALRGSPRR PSSAGLREGQ ESPASPPEWK DRAETVIIGG GCVGVSLAYH 60
LAKAGMRDVV LMEKSELTAG STWHAAGLTT YFHPGINLKK IHYDSIKLYE RLEEETGQVV 120
GFHQPGSIRL ATTPVRVDEF KYQMTRTNWH ATEQYIIEPE KIHELFPLLN MNKILAGLYN 180
PGDGHIDPYS LTMALAAGAR KYGALLKYPA PVTSLKPRPD GTWDVETPQG SVRANRIVNA 240
AGFWAREVGK MIGLDHPLIP VQHQYVVTST IPEVKALKRE LPVLRDLEGS YYLRQERDGL 300
LFGPYESQEK MKLQASWVTH GVPPGFGKEL FESDLDRISD HLEAAMEMIP VLKKADIINV 360
VNGPITYSPD ILPMVGPHQG VRNYWVATGF GYGIIHAGGV GKFLSDWILH GEPPFDLIEL 420
DPNRYGKWTT TQYTEAKARE SYGFNNIVGY PKEERFAGRP TQRVSGLYKT LKSKCSMGFH 480
AGWEQPHWFY KPGQDTQYRP SFRRTNWFEP VGSEYKQVMQ RVGVIDLSPF GKFNIKGRDS 540
TQLLDHLFAN VIPKVGFTNI SHMLTPRGRV YAELTVSQQS PGEFLLITGS GSELHDLRWI 600
EEAAFRGGYD VEIQNITDEF GVLGVAGPYA RRVLQKLTSE DLSDDAFKFL QTKSFNISDI 660
PVTAIRISYT GELGWELYHR REDSATLYER IMSAGQEEGI GDFGTYALNA LRLEKAFRAW 720
GSEMNCDTNP LEAGLEYFVK LNKPADFIGK QALKQIKTEG LKRRLVCLTV ATDDVDPEGN 780
ESIWYKGKVV GNTTSGSYSY SIQKSLAFAY VPVQLSEVGQ QVEVELLGKN YPATIIQEPL 840
VLTEPARARL QKDGKKTNLE KGPSRTTKL 869 
Gene Ontology
 GO:0005739; C:mitochondrion; IDA:MGI.
 GO:0004047; F:aminomethyltransferase activity; IEA:InterPro.
 GO:0047865; F:dimethylglycine dehydrogenase activity; IEA:EC.
 GO:0006579; P:amino-acid betaine catabolic process; IEA:UniProtKB-UniPathway.
 GO:0006546; P:glycine catabolic process; IEA:InterPro. 
Interpro
 IPR006076; FAD-dep_OxRdtase.
 IPR013977; GCV_T_C.
 IPR006222; GCV_T_N.
 IPR027266; TrmE/GcvT_dom1. 
Pfam
 PF01266; DAO
 PF01571; GCV_T
 PF08669; GCV_T_C 
SMART
  
PROSITE
  
PRINTS