CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-039997
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Intraflagellar transport protein 88 homolog 
Protein Synonyms/Alias
  
Gene Name
 IFT88 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
685LCTDLGLKDAQEYARubiquitination[1, 2]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] Integrated proteomic analysis of post-translational modifications by serial enrichment.
 Mertins P, Qiao JW, Patel J, Udeshi ND, Clauser KR, Mani DR, Burgess MW, Gillette MA, Jaffe JD, Carr SA.
 Nat Methods. 2013 Jul;10(7):634-7. [PMID: 23749302] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome; Repeat. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 805 AA 
Protein Sequence
MMQNVHLAPE TDEDDLYSGY NDYNPIYDIE ELENDAAFQQ AVRTSHGRRP PSKTSLASSI 60
GRPMTGAIQD GVTRPMTAVR AAGFTKAALR GSAFDPLSQS RGPASPLEAK KKDSPEEKIK 120
QLEKEVNELV EESCIANSCG DLKLALEKAK DAGRKERVLV RQREQVTTPE NINLDLTYSV 180
LFNLASQYSV NEMYAEALNT YQVIVKNKMF SNAGILKMNM GNIYLKQRNY SKAIKFYRMA 240
LDQVPSVNKQ MRIKIMQNIG VTFIQAGQYS DAINSYEHIM SMAPNLKAGY NLTICYFAIG 300
DREKMKKAFQ KLITVPLEID EDKYISPSDD PHTNLVTEAI KNDHLRQMER ERKAMAEKYI 360
MTSAKLIAPV IETSFAAGYD WCVEVVKASQ YVELANDLEI NKAVTYLRQK DYNQAVEILK 420
VLEKKDSRVK SAAATNLSAL YYMGKDFAQA SSYADIAVNS DRYNPAALTN KGNTVFANGD 480
YEKAAEFYKE ALRNDSSCTE ALYNIGLTYE KLNRLDEALD CFLKLHAILR NSAEVLYQIA 540
NIYELMENPS QAIEWLMQVV SVIPTDPQVL SKLGELYDRE GDKSQAFQYY YESYRYFPCN 600
IEVIEWLGAY YIDTQFWEKA IQYFERASLI QPTQVKWQLM VASCFRRSGN YQKALDTYKD 660
THRKFPENVE CLRFLVRLCT DLGLKDAQEY ARKLKRLEKM KEIREQRIKS GRDGSGGSRG 720
KREGSASGDS GQNYSASSKG ERLSARLRAL PGTNEPYESS SNKEIDASYV DPLGPQIERP 780
KTAAKKRIDE DDFADEELGD DLLPE 805 
Gene Ontology
  
Interpro
 IPR006597; Sel1-like.
 IPR013026; TPR-contain_dom.
 IPR011990; TPR-like_helical.
 IPR013105; TPR_2.
 IPR019734; TPR_repeat. 
Pfam
 PF07719; TPR_2
 PF13174; TPR_6 
SMART
 SM00671; SEL1
 SM00028; TPR 
PROSITE
 PS50005; TPR
 PS50293; TPR_REGION 
PRINTS