CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-013871
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ribonuclease Y 
Protein Synonyms/Alias
 RNase Y 
Gene Name
 rny 
Gene Synonyms/Alias
 TTHA1817 
Created Date
 July 27, 2013 
Organism
 Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) 
NCBI Taxa ID
 300852 
Lysine Modification
Position
Peptide
Type
References
132RSLQEELKEERERLKacetylation[1]
Reference
 [1] Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus.
 Okanishi H, Kim K, Masui R, Kuramitsu S.
 J Proteome Res. 2013 Aug 1;. [PMID: 23901841
Functional Description
 Endoribonuclease that initiates mRNA decay (By similarity). 
Sequence Annotation
 DOMAIN 264 327 KH.
 DOMAIN 391 482 HD.  
Keyword
 Cell membrane; Complete proteome; Endonuclease; Hydrolase; Membrane; Nuclease; Reference proteome; RNA-binding; Transmembrane; Transmembrane helix. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 574 AA 
Protein Sequence
MSLLDLVLLL LVLGLGGVLL LRRKGEDRSA QEARELLEAA RREAREVLEA ARKEARDILE 60
AARQEAKALR QEAEARAKAQ REEVEAELRR RLEAAEAEAK KRLEEAGERL KAEREELRAE 120
RERLRSLQEE LKEERERLKA EREELRREGE RLAKRAEALD ARAARLEEAE AELVRKEEAL 180
KAEARALEER LKEVERRLYE VAGLTPEEAR RLVLERLDRE LEEEKAQRVR AALERARLEA 240
RREAQKILAQ AMQRQASETA AQLAVTVVPI PSDAMKGRII GREGRNIRAF EALTGVDLII 300
DDTPDAVLLS SFNPIRREIA RMALEELLKD GRIHPSRIEE VVEKAKQEMK TFIYERGEEA 360
ALEAGVVGLK PGLIQLLGRL HFRSSYGQNV LKHSIQVAHL AGIMAAELGL DAALARRAGL 420
LHDIGKSVDR EVEGSHVEIG IALARRFGEP KEVVDAIAHH HDPDNAETLY AVLVAAADAL 480
SAARPGARRE SLEEYLQRLE ALERIALSFP GVETAFAVQA GREVRVIVKP EKISDAKATL 540
LAREIASRIE KEMNYPGQVQ VTVVRETRAV EYAR 574 
Gene Ontology
 GO:0016021; C:integral to membrane; IEA:UniProtKB-KW.
 GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
 GO:0004521; F:endoribonuclease activity; IEA:HAMAP.
 GO:0046872; F:metal ion binding; IEA:InterPro.
 GO:0008081; F:phosphoric diester hydrolase activity; IEA:InterPro.
 GO:0003723; F:RNA binding; IEA:HAMAP.
 GO:0006402; P:mRNA catabolic process; IEA:HAMAP. 
Interpro
 IPR022711; Cyclic-nucl_2Pdiesterase_N.
 IPR003607; HD/PDEase_dom.
 IPR006674; HD_domain.
 IPR004087; KH_dom.
 IPR004088; KH_dom_type_1.
 IPR017705; Ribonuclease_Y.
 IPR006675; Uncharacterised_HDIG. 
Pfam
 PF12072; DUF3552
 PF01966; HD
 PF00013; KH_1 
SMART
 SM00471; HDc
 SM00322; KH 
PROSITE
 PS50084; KH_TYPE_1 
PRINTS