CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-011432
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 DNA repair protein RAD51 homolog 1 
Protein Synonyms/Alias
 HsRAD51; hRAD51; RAD51 homolog A 
Gene Name
 RAD51 
Gene Synonyms/Alias
 RAD51A; RECA 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
58AVAYAPKKELINIKGubiquitination[1, 2]
64KKELINIKGISEAKAubiquitination[2]
157DRGGGEGKAMYIDTEubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961]
 [2] hCKSAAP_UbSite: improved prediction of human ubiquitination sites by exploiting amino acid pattern and properties.
 Chen Z, Zhou Y, Song J, Zhang Z.
 Biochim Biophys Acta. 2013 Aug;1834(8):1461-7. [PMID: 23603789
Functional Description
 Participates in a common DNA damage response pathway associated with the activation of homologous recombination and double-strand break repair. Binds to single and double stranded DNA and exhibits DNA-dependent ATPase activity. Underwinds duplex DNA and forms helical nucleoprotein filaments. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51C and XRCC3. 
Sequence Annotation
 DOMAIN 48 77 HhH.
 NP_BIND 127 134 ATP (By similarity).
 REGION 184 257 Interaction with PALB2.
 MOD_RES 54 54 Phosphotyrosine; by ABL1.
 MOD_RES 309 309 Phosphothreonine; by CHEK1.  
Keyword
 3D-structure; Alternative splicing; ATP-binding; Complete proteome; Cytoplasm; Disease mutation; DNA damage; DNA recombination; DNA repair; DNA-binding; Mitochondrion; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 339 AA 
Protein Sequence
MAMQMQLEAN ADTSVEEESF GPQPISRLEQ CGINANDVKK LEEAGFHTVE AVAYAPKKEL 60
INIKGISEAK ADKILTESRS VARLECNSVI LVYCTLRLSG SSDSPASASR VVGTTGGIET 120
GSITEMFGEF RTGKTQICHT LAVTCQLPID RGGGEGKAMY IDTEGTFRPE RLLAVAERYG 180
LSGSDVLDNV AYARAFNTDH QTQLLYQASA MMVESRYALL IVDSATALYR TDYSGRGELS 240
ARQMHLARFL RMLLRLADEF GVAVVITNQV VAQVDGAAMF AADPKKPIGG NIIAHASTTR 300
LYLRKGRGET RICKIYDSPC LPEAEAMFAI NADGVGDAKD 340 
Gene Ontology
 GO:0000794; C:condensed nuclear chromosome; ISS:UniProtKB.
 GO:0000800; C:lateral element; IEA:Compara.
 GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
 GO:0005739; C:mitochondrion; IDA:UniProtKB.
 GO:0005634; C:nucleus; IDA:UniProtKB.
 GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB.
 GO:0016605; C:PML body; IDA:UniProtKB.
 GO:0005524; F:ATP binding; IDA:MGI.
 GO:0003684; F:damaged DNA binding; IEA:InterPro.
 GO:0003690; F:double-stranded DNA binding; IDA:UniProtKB.
 GO:0003697; F:single-stranded DNA binding; IDA:UniProtKB.
 GO:0043142; F:single-stranded DNA-dependent ATPase activity; IDA:UniProtKB.
 GO:0000730; P:DNA recombinase assembly; TAS:Reactome.
 GO:0006268; P:DNA unwinding involved in replication; IDA:UniProtKB.
 GO:0006312; P:mitotic recombination; TAS:ProtInc.
 GO:0051106; P:positive regulation of DNA ligation; IDA:UniProtKB.
 GO:0051260; P:protein homooligomerization; IPI:UniProtKB.
 GO:0007131; P:reciprocal meiotic recombination; TAS:ProtInc. 
Interpro
 IPR003593; AAA+_ATPase.
 IPR011941; DNA_recomb/repair_Rad51.
 IPR013632; DNA_recomb/repair_Rad51_C.
 IPR016467; DNA_recomb/repair_RecA-like.
 IPR020588; DNA_recomb_RecA/RadB_ATP-bd.
 IPR010995; DNA_repair_Rad51/TF_NusA_a-hlx.
 IPR003583; Hlx-hairpin-Hlx_DNA-bd_motif.
 IPR027417; P-loop_NTPase.
 IPR020587; RecA_monomer-monomer_interface. 
Pfam
 PF08423; Rad51 
SMART
 SM00382; AAA
 SM00278; HhH1 
PROSITE
 PS50162; RECA_2
 PS50163; RECA_3 
PRINTS