CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-001818
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Ribulose bisphosphate carboxylase large chain 
Protein Synonyms/Alias
 RuBisCO large subunit 
Gene Name
 rbcL 
Gene Synonyms/Alias
 rbcA 
Created Date
 July 27, 2013 
Organism
 Nicotiana tabacum (Common tobacco) 
NCBI Taxa ID
 4097 
Lysine Modification
Position
Peptide
Type
References
14TKASVGFKAGVKEYKmethylation[1, 2]
Reference
 [1] Rubisco small and large subunit N-methyltransferases. Bi- and mono-functional methyltransferases that methylate the small and large subunits of Rubisco.
 Ying Z, Mulligan RM, Janney N, Houtz RL.
 J Biol Chem. 1999 Dec 17;274(51):36750-6. [PMID: 10593982]
 [2] Update on activities at the Universal Protein Resource (UniProt) in 2013.
 e="String">UniProt Consortium.
 Nucleic Acids Res. 2013 Jan;41(Database issue):D43-7. [PMID: 23161681
Functional Description
 RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. 
Sequence Annotation
 ACT_SITE 175 175 Proton acceptor.
 ACT_SITE 294 294 Proton acceptor.
 METAL 201 201 Magnesium; via carbamate group.
 METAL 203 203 Magnesium.
 METAL 204 204 Magnesium.
 BINDING 123 123 Substrate; in homodimeric partner.
 BINDING 173 173 Substrate.
 BINDING 177 177 Substrate.
 BINDING 295 295 Substrate.
 BINDING 327 327 Substrate.
 BINDING 379 379 Substrate.
 MOD_RES 3 3 N-acetylproline.
 MOD_RES 14 14 N6,N6,N6-trimethyllysine.
 MOD_RES 201 201 N6-carboxylysine.
 DISULFID 247 247 Interchain; in linked form.  
Keyword
 3D-structure; Acetylation; Calvin cycle; Carbon dioxide fixation; Chloroplast; Direct protein sequencing; Disulfide bond; Lyase; Magnesium; Metal-binding; Methylation; Monooxygenase; Oxidoreductase; Photorespiration; Photosynthesis; Plastid. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 477 AA 
Protein Sequence
MSPQTETKAS VGFKAGVKEY KLTYYTPEYQ TKDTDILAAF RVTPQPGVPP EEAGAAVAAE 60
SSTGTWTTVW TDGLTSLDRY KGRCYRIERV VGEKDQYIAY VAYPLDLFEE GSVTNMFTSI 120
VGNVFGFKAL RALRLEDLRI PPAYVKTFQG PPHGIQVERD KLNKYGRPLL GCTIKPKLGL 180
SAKNYGRAVY ECLRGGLDFT KDDENVNSQP FMRWRDRFLF CAEALYKAQA ETGEIKGHYL 240
NATAGTCEEM IKRAVFAREL GVPIVMHDYL TGGFTANTSL AHYCRDNGLL LHIHRAMHAV 300
IDRQKNHGIH FRVLAKALRM SGGDHIHSGT VVGKLEGERD ITLGFVDLLR DDFVEQDRSR 360
GIYFTQDWVS LPGVLPVASG GIHVWHMPAL TEIFGDDSVL QFGGGTLGHP WGNAPGAVAN 420
RVALEACVKA RNEGRDLAQE GNEIIREACK WSPELAAACE VWKEIVFNFA AVDVLDK 477 
Gene Ontology
 GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
 GO:0000287; F:magnesium ion binding; IEA:HAMAP.
 GO:0004497; F:monooxygenase activity; IEA:UniProtKB-KW.
 GO:0016984; F:ribulose-bisphosphate carboxylase activity; IEA:HAMAP.
 GO:0009853; P:photorespiration; IEA:UniProtKB-KW.
 GO:0019253; P:reductive pentose-phosphate cycle; IEA:UniProtKB-KW. 
Interpro
 IPR020878; RuBisCo_large_chain_AS.
 IPR020888; RuBisCO_lsu.
 IPR000685; RuBisCO_lsu_C.
 IPR017443; RuBisCO_lsu_fd_N.
 IPR017444; RuBisCO_lsu_N. 
Pfam
 PF00016; RuBisCO_large
 PF02788; RuBisCO_large_N 
SMART
  
PROSITE
 PS00157; RUBISCO_LARGE 
PRINTS