CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-018806
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 USP6 N-terminal-like protein 
Protein Synonyms/Alias
 Related to the N-terminus of tre; RN-tre 
Gene Name
 USP6NL 
Gene Synonyms/Alias
 KIAA0019 
Created Date
 July 27, 2013 
Organism
 Homo sapiens (Human) 
NCBI Taxa ID
 9606 
Lysine Modification
Position
Peptide
Type
References
148RDLYSKLKHRARGCSubiquitination[1]
Reference
 [1] Refined preparation and use of anti-diglycine remnant (K-ε-GG) antibody enables routine quantification of 10,000s of ubiquitination sites in single proteomics experiments.
 Udeshi ND, Svinkina T, Mertins P, Kuhn E, Mani DR, Qiao JW, Carr SA.
 Mol Cell Proteomics. 2013 Mar;12(3):825-31. [PMID: 23266961
Functional Description
 Acts as a GTPase-activating protein for RAB5A and RAB43. Involved in receptor trafficking. In complex with EPS8 inhibits internalization of EGFR. Involved in retrograde transport from the endocytic pathway to the Golgi apparatus. Involved in the transport of Shiga toxin from early and recycling endosomes to the trans-Golgi network. Required for structural integrity of the Golgi complex. 
Sequence Annotation
 DOMAIN 100 292 Rab-GAP TBC.
 MOD_RES 391 391 Phosphoserine.
 MOD_RES 396 396 Phosphoserine.
 MOD_RES 546 546 Phosphoserine (By similarity).
 MOD_RES 582 582 Phosphotyrosine.
 MOD_RES 585 585 Phosphoserine.
 MOD_RES 642 642 Phosphoserine.
 MOD_RES 655 655 Phosphoserine.
 MOD_RES 659 659 Phosphoserine.
 MOD_RES 673 673 Phosphoserine (By similarity).
 MOD_RES 680 680 Phosphoserine.
 MOD_RES 716 716 Phosphoserine.
 MOD_RES 729 729 Phosphotyrosine.  
Keyword
 Alternative splicing; Complete proteome; Cytoplasmic vesicle; Golgi apparatus; GTPase activation; Phosphoprotein; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 828 AA 
Protein Sequence
MRTEAVVNSQ GQTDYLTKDS DQDVALKLAQ ERAEIVAKYD RGREGAEIEP WEDADYLVYK 60
VTDRFGFLHE EELPDHNVAV ERQKHLEIER TTKWLKMLKG WEKYKNTEKF HRRIYKGIPL 120
QLRGEVWALL LEIPKMKEET RDLYSKLKHR ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG 180
VKQQSLFHVL AAYSIYNTEV GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF 240
FVQGFPKLLR FQEHHEKILN KFLSKLKQHL DSQEIYTSFY TMKWFFQCFL DRTPFTLNLR 300
IWDIYIFEGE RVLTAMSYTI LKLHKKHLMK LSMEELVEFF QETLAKDFFF EDDFVIEQLQ 360
ISMTELKRAK LDLPEPGKED EYPKKPLGQL PPELQSWGVH HLSNGQRSVG RPSPLASGRR 420
ESGAPHRRHE HSPHPQSRTG TPERAQPPRR KSVEEESKKL KDEADFQRKL PSGPQDSSRQ 480
YNHAAANQNS NATSNIRKEF VPKWNKPSDV SATERTAKYT MEGKGRAAHP ALAVTVPGPA 540
EVRVSNVRPK MKALDAEDGK RGSTASQYDN VPGPELDSGA SVEEALERAY SQSPRHALYP 600
PSPRKHAEPS SSPSKVSNKF TFKVQPPSHA RYPSQLDGEA RGLAHPPSYS NPPVYHGNSP 660
KHFPTANSSF ASPQFSPGTQ LNPSRRPHGS TLSVSASPEK SYSRPSPLVL PSSRIEVLPV 720
DTGAGGYSGN SGSPKNGKLI IPPVDYLPDN RTWSEVSYTY RPETQGQSWT RDASRGNLPK 780
YSAFQLAPFQ DHGLPAVSVD SPVRYKASPA AEDASPSGYP YSGPPPPAYH YRNRDGLSIQ 840
ESVLL 845 
Gene Ontology
 GO:0016023; C:cytoplasmic membrane-bounded vesicle; IEA:UniProtKB-SubCell.
 GO:0031410; C:cytoplasmic vesicle; IDA:UniProtKB.
 GO:0005794; C:Golgi apparatus; IEA:UniProtKB-SubCell.
 GO:0005097; F:Rab GTPase activator activity; IDA:UniProtKB.
 GO:0007030; P:Golgi organization; IMP:UniProtKB.
 GO:0035526; P:retrograde transport, plasma membrane to Golgi; IMP:UniProtKB. 
Interpro
 IPR000195; Rab-GTPase-TBC_dom. 
Pfam
 PF00566; RabGAP-TBC 
SMART
 SM00164; TBC 
PROSITE
 PS50086; TBC_RABGAP 
PRINTS