CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-038664
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
  
Protein Name
 Pre-mRNA-processing factor 39 
Protein Synonyms/Alias
  
Gene Name
 Prpf39 
Gene Synonyms/Alias
  
Created Date
 July 27, 2013 
Organism
 Mus musculus (Mouse) 
NCBI Taxa ID
 10090 
Lysine Modification
Position
Peptide
Type
References
246SHHFQRFKEHVQNNLubiquitination[1]
512KNLPKSRKVLLEAIEubiquitination[1]
Reference
 [1] Proteomic analyses reveal divergent ubiquitylation site patterns in murine tissues.
 Wagner SA, Beli P, Weinert BT, Schölz C, Kelstrup CD, Young C, Nielsen ML, Olsen JV, Brakebusch C, Choudhary C.
 Mol Cell Proteomics. 2012 Dec;11(12):1578-85. [PMID: 22790023] 
Functional Description
  
Sequence Annotation
  
Keyword
 Complete proteome; Reference proteome. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 665 AA 
Protein Sequence
MQNSHMEEYR NSDNGSTGNS SEVAVVEHPD FSTEIMNVTE MEQSPDASPS AHASTEENEM 60
ANAVNLPVTE AEGDFPPEFE KFWKTVEMNP QDFTGWVYLL QYVEQENHLM AARKAFDKFF 120
VHYPYCYGYW KKYADLEKRH DNIKQSDEVY RRGLQAIPLS VDLWIHYINF LKETLDPGDQ 180
ETNTTIRGTF EHAVLAAGTD FRSDKLWEMY INWENEQGNL REVTAVYDRI LGIPTQLYSH 240
HFQRFKEHVQ NNLPRDLLTG EQFIQLRREL ASVNGHSGDD GPPGDDLPSG IEDITDPAKL 300
ITEIENMRHR IIEIHQEMFN YNEHEVSKRW TFEEGIKRPY FHVKPLEKAQ LKNWKEYLEF 360
EIENGTHERV VVLFERCVIS CALYEEFWIK YAKYMENHSI EGVRHVFSRA CTVHLPKKPM 420
AHMLWAAFEE QQGNINEARI ILRTFEECVL GLAMVRLRRV SLERRHGNME EAEHLLQDAI 480
KNAKSNNESS FYAIKLARHL FKIQKNLPKS RKVLLEAIEK DKENTKLYLN LLEMEYSCDL 540
KQNEENILNC FDKAIHGSLP IKMRITFSQR KVEFLEDFGS DVNKLLNAYD EHQTLLKEQD 600
TLKRKAENGS EEPEEKKAHT EDLSSAQIID GDLQANQAAY NYSAWYQYNY QNPWNYGQYY 660
PPPPT 665 
Gene Ontology
 GO:0005634; C:nucleus; IEA:Compara.
 GO:0006396; P:RNA processing; IEA:InterPro. 
Interpro
 IPR003107; HAT.
 IPR011990; TPR-like_helical. 
Pfam
  
SMART
 SM00386; HAT 
PROSITE
  
PRINTS