CPLM 1.0 - Compendium of Protein Lysine Modification
TagContent
CPLM ID CPLM-003059
UniProt Accession
Genbank Protein ID
Genbank Nucleotide ID
Protein Name
 Tryptophanase 
Protein Synonyms/Alias
 L-tryptophan indole-lyase; TNase 
Gene Name
 tnaA 
Gene Synonyms/Alias
 ind; b3708; JW3686 
Created Date
 July 27, 2013 
Organism
 Escherichia coli (strain K12) 
NCBI Taxa ID
 83333 
Lysine Modification
Position
Peptide
Type
References
5***MENFKHLPEPFRacetylation[1, 2, 3]
88YALAESVKNIFGYQYacetylation[3]
115IYIPVLIKKREQEKGacetylation[1, 2, 3, 4]
121IKKREQEKGLDRSKMacetylation[3]
127EKGLDRSKMVAFSNYacetylation[3]
156TVRNVYIKEAFDTGVacetylation[1, 2, 3, 4]
156TVRNVYIKEAFDTGVpupylation[5]
168TGVRYDFKGNFDLEGacetylation[3]
211PVSLANLKAMYSIAKacetylation[3]
218KAMYSIAKKYDIPVVacetylation[3]
219AMYSIAKKYDIPVVMacetylation[3]
239AENAYFIKQREAEYKacetylation[2, 3, 4]
246KQREAEYKDWTIEQIacetylation[3, 4]
259QITRETYKYADMLAMacetylation[3, 4]
269DMLAMSAKKDAMVPMacetylation[3]
270MLAMSAKKDAMVPMGacetylation[3]
283MGGLLCMKDDSFFDVacetylation[3]
366AAFVDAGKLLPHIPAacetylation[3]
387ALACELYKVAGIRAVacetylation[3]
406FLLGRDPKTGKQLPCacetylation[4]
409GRDPKTGKQLPCPAEacetylation[3]
440DFIIEAFKHVKENAAacetylation[3]
443IEAFKHVKENAANIKacetylation[3]
450KENAANIKGLTFTYEacetylation[1, 3]
459LTFTYEPKVLRHFTAacetylation[2, 3, 4]
Reference
 [1] Lysine acetylation is a highly abundant and evolutionarily conserved modification in Escherichia coli.
 Zhang J, Sprung R, Pei J, Tan X, Kim S, Zhu H, Liu CF, Grishin NV, Zhao Y.
 Mol Cell Proteomics. 2009 Feb;8(2):215-25. [PMID: 18723842]
 [2] The diversity of lysine-acetylated proteins in Escherichia coli.
 Yu BJ, Kim JA, Moon JH, Ryu SE, Pan JG.
 J Microbiol Biotechnol. 2008 Sep;18(9):1529-36. [PMID: 18852508]
 [3] Comprehensive profiling of protein lysine acetylation in Escherichia coli.
 Zhang K, Zheng S, Yang JS, Chen Y, Cheng Z.
 J Proteome Res. 2013 Feb 1;12(2):844-51. [PMID: 23294111]
 [4] Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli.
 Weinert BT, Iesmantavicius V, Wagner SA, Schölz C, Gummesson B, Beli P, Nyström T, Choudhary C.
 Mol Cell. 2013 Jul 25;51(2):265-72. [PMID: 23830618]
 [5] Reconstitution of the Mycobacterium tuberculosis pupylation pathway in Escherichia coli.
 Cerda-Maira FA, McAllister F, Bode NJ, Burns KE, Gygi SP, Darwin KH.
 EMBO Rep. 2011 Jul 8;12(8):863-70. [PMID: 21738222
Functional Description
  
Sequence Annotation
 MOD_RES 5 5 N6-acetyllysine.
 MOD_RES 115 115 N6-acetyllysine.
 MOD_RES 156 156 N6-acetyllysine.
 MOD_RES 270 270 N6-(pyridoxal phosphate)lysine.
 MOD_RES 450 450 N6-acetyllysine.  
Keyword
 3D-structure; Acetylation; Complete proteome; Cytoplasm; Direct protein sequencing; Lyase; Pyridoxal phosphate; Reference proteome; Tryptophan catabolism. 
Sequence Source
 UniProt (SWISSPROT/TrEMBL); GenBank; EMBL 
Protein Length
 471 AA 
Protein Sequence
MENFKHLPEP FRIRVIEPVK RTTRAYREEA IIKSGMNPFL LDSEDVFIDL LTDSGTGAVT 60
QSMQAAMMRG DEAYSGSRSY YALAESVKNI FGYQYTIPTH QGRGAEQIYI PVLIKKREQE 120
KGLDRSKMVA FSNYFFDTTQ GHSQINGCTV RNVYIKEAFD TGVRYDFKGN FDLEGLERGI 180
EEVGPNNVPY IVATITSNSA GGQPVSLANL KAMYSIAKKY DIPVVMDSAR FAENAYFIKQ 240
REAEYKDWTI EQITRETYKY ADMLAMSAKK DAMVPMGGLL CMKDDSFFDV YTECRTLCVV 300
QEGFPTYGGL EGGAMERLAV GLYDGMNLDW LAYRIAQVQY LVDGLEEIGV VCQQAGGHAA 360
FVDAGKLLPH IPADQFPAQA LACELYKVAG IRAVEIGSFL LGRDPKTGKQ LPCPAELLRL 420
TIPRATYTQT HMDFIIEAFK HVKENAANIK GLTFTYEPKV LRHFTAKLKE V 471 
Gene Ontology
 GO:0060187; C:cell pole; IDA:EcoCyc.
 GO:0005829; C:cytosol; IDA:UniProtKB.
 GO:0016020; C:membrane; IDA:UniProtKB.
 GO:0042802; F:identical protein binding; IDA:EcoCyc.
 GO:0080146; F:L-cysteine desulfhydrase activity; IMP:EcoCyc.
 GO:0030955; F:potassium ion binding; IDA:EcoCyc.
 GO:0030170; F:pyridoxal phosphate binding; IDA:EcoCyc.
 GO:0009034; F:tryptophanase activity; IDA:EcoCyc. 
Interpro
 IPR001597; ArAA_b-elim_lyase/Thr_aldolase.
 IPR011166; Beta-eliminating_lyase.
 IPR015424; PyrdxlP-dep_Trfase.
 IPR015421; PyrdxlP-dep_Trfase_major_sub1.
 IPR015422; PyrdxlP-dep_Trfase_major_sub2.
 IPR013440; TNase.
 IPR018176; Tryptophanase_CS. 
Pfam
 PF01212; Beta_elim_lyase 
SMART
  
PROSITE
 PS00853; BETA_ELIM_LYASE 
PRINTS